Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 3
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
26228564
|
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G059600.1 | Wheat | cytosol | 2.88 | 8.23 |
| TraesCS1A01G288200.1 | Wheat | nucleus | 3.4 | 6.96 |
| CDX67452 | Canola | nucleus | 1.99 | 6.21 |
| TraesCS1A01G288400.1 | Wheat | nucleus | 4.48 | 5.84 |
| TraesCS1A01G089100.1 | Wheat | plastid | 3.84 | 5.53 |
| PGSC0003DMT400063506 | Potato | nucleus | 2.18 | 5.3 |
| CDY11681 | Canola | nucleus | 1.6 | 5.01 |
| Solyc04g049930.2.1 | Tomato | nucleus | 2.37 | 4.58 |
| TraesCS1A01G059700.1 | Wheat | cytosol | 0.77 | 3.23 |
| PGSC0003DMT400069444 | Potato | nucleus | 1.6 | 2.18 |
| KRH17636 | Soybean | nucleus | 0.83 | 1.74 |
| CDY48152 | Canola | nucleus | 0.96 | 1.69 |
| Bra018079.1-P | Field mustard | nucleus | 0.9 | 1.57 |
| KRG90051 | Soybean | nucleus | 0.77 | 1.56 |
| AT3G48187.1 | Thale cress | nucleus | 0.83 | 1.54 |
| CDY39560 | Canola | nucleus | 0.7 | 1.3 |
| VIT_17s0000g08510.t01 | Wine grape | nucleus | 1.02 | 1.29 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G538200.1 | EnsemblPlantsGene:TraesCS3A01G538200 | ncoils:Coil | PANTHER:PTHR35491 | PANTHER:PTHR35491:SF3 | SEG:seg |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr3A:+:749402236..749407134
Molecular Weight (calculated)
166261.0 Da
IEP (calculated)
5.417
GRAVY (calculated)
-1.033
Length
1561 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDPSALRPFR AHFPRLAAQS TVSSYVASVD AALQEVTRRI EAGLSCSCSP PAVARKQQIH NSGIREGAYG AVVDEVYMRD TFRAKPFVDY ISALGRSPLA
0101: GADRLDLATA MAQLRSFNRL RCPMELPEFV IFQGIEDVAA AVAPEADADA DADADADVAA TQQTKRKRTE EKGGGDGNAP AKEKRSRHGE SSSRKKDAPA
0201: EEQEEAIDDA PTKEEKKSRR RGESSSRERD AAAKEPEVAI DVEDSPPMPR DRIMDTSEDA PDKGEAPANK DAAMVEDTPP MPSTKQRKSK RGSKTSADKK
0301: KKDTSKDAAG KGESLPEAEP AKEDDVNGDS SMPSVEATDD TLSKQRKSKR VSRSAAESKK KDTSKDAADK GEPLPEAEPA KEDDMDEDSS MPSSGAADDT
0401: LSKGKKSKRA TRSSGKTKKN DTSKDADKTE SVTEPAKEVA ENEDSSMPSA EATDDTVSKG RKSKKSKGSA KTKKKDADKN ESLPEPAKEV AEDEDSSMPS
0501: AEAIDGALSK ETNSKSSTRS AKKKKKDAGK KESLPDPAKE GAENEDSSMP SGGATDGALS KETNSKISTR SAKKKKKDAD KKESLPGPAK EKATGTDSSM
0601: LSRVVADDTP SKKRKSSKKS SASNRIIDTS MDAVDGMLSE RKSGRRLRSS HKIVEALEVM KWPRKKDAGE TTKVKDKDAA LPKENNLGHR AGSARHKDKT
0701: TITKDGNGLT VSPLKKRLHL DVHSATENAP FAVSELGRKK KTLIELLAET ATPNPSAGGK SKARAERPLP SSVLKPEATP NTRGKRSLPA STETPEDPGR
0801: DKDTIKTREK RSVAASTEKP ERDTRSTVKA RRKSSLPSSA EEPEDPDRDK NDAMKTRGKR SLPASAEKPQ DPDRGTKGTA KTRGKRSLPE SIEDPDRVTK
0901: GSSKTKGKGS LPESTEEPEG PDDRDMKDSM HTRKRKKLDT LGDLSSQPQP VSPKGSTKAR EVKRKAAGQK SQASPVVKAN GGISGDTSSK RSARRKAAEP
1001: KPQETPVVKA NGEASQTRSR RAINSEVTVP DKSPRSVKPD KGKKGAVAEG SPSCGEMLSQ LCVGASDAEK MGKIAPTSAS FLTDFLKSAR ACTSDVEEAA
1101: NADCRASSPH ADEEIPEKAA ADKVSSPNAD EEIPEEAAAD KISSPHAVEE IPEKATDNVS SPHADMEVPE EAADKVSSPH ADDEVIPEEA AEKVSSPSAD
1201: EAIPEEAAEK VSSPNADEVV PEKAAVEVSS APADEAIPEK AAERVSSPNA DEVIPEEAAD KVSSPHADEA IPEVAADEVS LAPADEETLL KVKEEVSSPH
1301: ADEVIPEKTA EKVSSPHAEE AIPEKAADEA SSPPADVETP EKETEKVSCP PVDEEIAEKP ADKVSSPHAE AEMSEKAAKS SPAPSEPPVV ADNMKDDYWS
1401: DILIDVEEPL SSLAKKKDKG KMRSSKKQRR DDEMKQDESQ QDKAEAENGK ANGGGGQASA AEEDASLMGL VLHFSKPGAV PSRGDLIEIF SQYGPVSEAK
1501: TETDQHSSSA QVVFRRRADA EAAFGGAGKM AALRPSLDSF RLTDFPSAAA AFRGDDGPKQ G
0101: GADRLDLATA MAQLRSFNRL RCPMELPEFV IFQGIEDVAA AVAPEADADA DADADADVAA TQQTKRKRTE EKGGGDGNAP AKEKRSRHGE SSSRKKDAPA
0201: EEQEEAIDDA PTKEEKKSRR RGESSSRERD AAAKEPEVAI DVEDSPPMPR DRIMDTSEDA PDKGEAPANK DAAMVEDTPP MPSTKQRKSK RGSKTSADKK
0301: KKDTSKDAAG KGESLPEAEP AKEDDVNGDS SMPSVEATDD TLSKQRKSKR VSRSAAESKK KDTSKDAADK GEPLPEAEPA KEDDMDEDSS MPSSGAADDT
0401: LSKGKKSKRA TRSSGKTKKN DTSKDADKTE SVTEPAKEVA ENEDSSMPSA EATDDTVSKG RKSKKSKGSA KTKKKDADKN ESLPEPAKEV AEDEDSSMPS
0501: AEAIDGALSK ETNSKSSTRS AKKKKKDAGK KESLPDPAKE GAENEDSSMP SGGATDGALS KETNSKISTR SAKKKKKDAD KKESLPGPAK EKATGTDSSM
0601: LSRVVADDTP SKKRKSSKKS SASNRIIDTS MDAVDGMLSE RKSGRRLRSS HKIVEALEVM KWPRKKDAGE TTKVKDKDAA LPKENNLGHR AGSARHKDKT
0701: TITKDGNGLT VSPLKKRLHL DVHSATENAP FAVSELGRKK KTLIELLAET ATPNPSAGGK SKARAERPLP SSVLKPEATP NTRGKRSLPA STETPEDPGR
0801: DKDTIKTREK RSVAASTEKP ERDTRSTVKA RRKSSLPSSA EEPEDPDRDK NDAMKTRGKR SLPASAEKPQ DPDRGTKGTA KTRGKRSLPE SIEDPDRVTK
0901: GSSKTKGKGS LPESTEEPEG PDDRDMKDSM HTRKRKKLDT LGDLSSQPQP VSPKGSTKAR EVKRKAAGQK SQASPVVKAN GGISGDTSSK RSARRKAAEP
1001: KPQETPVVKA NGEASQTRSR RAINSEVTVP DKSPRSVKPD KGKKGAVAEG SPSCGEMLSQ LCVGASDAEK MGKIAPTSAS FLTDFLKSAR ACTSDVEEAA
1101: NADCRASSPH ADEEIPEKAA ADKVSSPNAD EEIPEEAAAD KISSPHAVEE IPEKATDNVS SPHADMEVPE EAADKVSSPH ADDEVIPEEA AEKVSSPSAD
1201: EAIPEEAAEK VSSPNADEVV PEKAAVEVSS APADEAIPEK AAERVSSPNA DEVIPEEAAD KVSSPHADEA IPEVAADEVS LAPADEETLL KVKEEVSSPH
1301: ADEVIPEKTA EKVSSPHAEE AIPEKAADEA SSPPADVETP EKETEKVSCP PVDEEIAEKP ADKVSSPHAE AEMSEKAAKS SPAPSEPPVV ADNMKDDYWS
1401: DILIDVEEPL SSLAKKKDKG KMRSSKKQRR DDEMKQDESQ QDKAEAENGK ANGGGGQASA AEEDASLMGL VLHFSKPGAV PSRGDLIEIF SQYGPVSEAK
1501: TETDQHSSSA QVVFRRRADA EAAFGGAGKM AALRPSLDSF RLTDFPSAAA AFRGDDGPKQ G
001: MSTESERIES VSEANASSLE VGNDQMSEAL AGQAQELKTI GDDKEGCGNF ASAGDNGMEK VNGFTNLVKE TESVNGELDL GTRTENVGGE SNQSDKKVLV
101: DSEEVMMVEK RGLLVEKEVE PDMVCSHGAD LSDVKVSDGR LDSEDLVQDR KPDGLEKQGT KVEDLDVVCF MGLEPHESKD ESILDDEIAH VAAKVKISDS
201: DLVWAKVRSH PWWPGQVFDA SAATDKAKKH FKKGSFLVTY FGDCTFAWNE ASRIKPFRQH FSQMAKQSSL PDFIDAIDFA LEEVSRRIEF GLACSCISEE
301: VYQKIKTQNV INPGIREDSS SIHGGDKVSS AVFFEPANLV GYVKRLACSP SYDATDALQL VSQRAQLLAF NRWKGYTDLP EFMTLQGSVE SAPKISPAEE
401: QSSLVEVSDP EPTKSKQVYT KRRKTNLQTE QSSLVEVSDP DKGDCKHDGV FEYEETIVPK KKEKTLAEFI AEKRVSRHNG NTSHEKSGNV PHCEKKRKVV
501: QSKVPKSTKK IKANLQTEDP GSPVSPKNDR KNNLSAGDKI TPQKARKSFG IGASILKVAN QMHCSTPTRL LPCSDSTSKK AAKSNGSGKS LQEKPKAEAL
601: SAREISPSTT LSSPHAASVT KTTSGKSNSV SLDHNLSGEL DQVRKEAPST NLVEDPMLES RDLKDSSKEQ VVHEDKKEAA NVADEKSIMD SNLTGEKISG
701: LDLREQPSNK NCSGGSDSCK EDVSAE
101: DSEEVMMVEK RGLLVEKEVE PDMVCSHGAD LSDVKVSDGR LDSEDLVQDR KPDGLEKQGT KVEDLDVVCF MGLEPHESKD ESILDDEIAH VAAKVKISDS
201: DLVWAKVRSH PWWPGQVFDA SAATDKAKKH FKKGSFLVTY FGDCTFAWNE ASRIKPFRQH FSQMAKQSSL PDFIDAIDFA LEEVSRRIEF GLACSCISEE
301: VYQKIKTQNV INPGIREDSS SIHGGDKVSS AVFFEPANLV GYVKRLACSP SYDATDALQL VSQRAQLLAF NRWKGYTDLP EFMTLQGSVE SAPKISPAEE
401: QSSLVEVSDP EPTKSKQVYT KRRKTNLQTE QSSLVEVSDP DKGDCKHDGV FEYEETIVPK KKEKTLAEFI AEKRVSRHNG NTSHEKSGNV PHCEKKRKVV
501: QSKVPKSTKK IKANLQTEDP GSPVSPKNDR KNNLSAGDKI TPQKARKSFG IGASILKVAN QMHCSTPTRL LPCSDSTSKK AAKSNGSGKS LQEKPKAEAL
601: SAREISPSTT LSSPHAASVT KTTSGKSNSV SLDHNLSGEL DQVRKEAPST NLVEDPMLES RDLKDSSKEQ VVHEDKKEAA NVADEKSIMD SNLTGEKISG
701: LDLREQPSNK NCSGGSDSCK EDVSAE
Arabidopsis Description
Tudor/PWWP/MBT superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SF36]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.