Factsheet for TraesCS1A01G059600.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G077800.1	Wheat	cytosol	76.23	75.68
TraesCS1D01G060800.1	Wheat	cytosol	72.39	72.53
HORVU1Hr1G012310.1	Barley	cytosol, nucleus	36.01	51.98
TraesCS1A01G059700.1	Wheat	cytosol	31.63	46.51
Os05t0122500-00	Rice	nucleus	36.2	37.57
EES18937	Sorghum	nucleus, plastid	32.91	35.57
Zm00001d010984_P001	Maize	plastid	30.71	32.88
Bra028857.1-P	Field mustard	nucleus	19.01	22.61
CDY04873	Canola	nucleus	18.83	22.39
CDY55692	Canola	nucleus	18.46	22.3
KRH32403	Soybean	nucleus	22.12	18.03
AT5G02950.2	Thale cress	nucleus	19.56	16.93
CDY07935	Canola	nucleus	16.82	16.28
KRH19811	Soybean	nucleus	22.49	15.81
GSMUA_Achr9P04320_001	Banana	nucleus	21.57	15.45
PGSC0003DMT400087303	Potato	nucleus	21.75	15.43
GSMUA_Achr10P...	Banana	nucleus	19.56	15.09
CDX73990	Canola	nucleus	15.72	14.85
VIT_08s0040g02440.t01	Wine grape	nucleus	22.85	14.08
TraesCS1A01G288200.1	Wheat	nucleus	18.46	13.27
AT3G09670.1	Thale cress	nucleus	17.55	13.22
GSMUA_Achr11P...	Banana	nucleus	16.82	12.6
Solyc04g049950.1.1	Tomato	nucleus	10.05	12.14
KRH34572	Soybean	nucleus	17.73	11.92
KRH70385	Soybean	nucleus	21.94	11.82
KRH33337	Soybean	nucleus	21.94	11.78
Bra001301.1-P	Field mustard	nucleus	7.13	11.54
TraesCS1A01G288400.1	Wheat	nucleus	20.48	9.34
TraesCS1A01G089100.1	Wheat	plastid	14.81	7.47
PGSC0003DMT400027409	Potato	nucleus	22.3	7.37
VIT_13s0019g03620.t01	Wine grape	nucleus	24.68	7.19
KRG92228	Soybean	nucleus	20.48	6.42
Solyc09g007340.2.1	Tomato	cytosol	21.94	5.66
TraesCS3A01G538200.1	Wheat	nucleus	8.23	2.88

Protein Annotations

EnsemblPlants:TraesCS1A01G059600.1	EnsemblPlantsGene:TraesCS1A01G059600	Gene3D:2.30.30.140	InterPro:IPR000313	InterPro:PWWP_dom	PANTHER:PTHR42851
PANTHER:PTHR42851:SF5	PFAM:PF00855	PFscan:PS50812	SEG:seg	SMART:SM00293	SUPFAM:SSF63748
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chr1A:-:40899356..40901209

Molecular Weight (calculated)

58441.4 Da

IEP (calculated)

8.536

GRAVY (calculated)

-0.313

Length

547 amino acids

Sequence
(BLAST)

001: MAYFCTLSGE DLSLSLPTRG GERARALAGH MASALAPEEG AGAKNVDEGL GSAVGRPSRH RVLRSDAAEV LQEGGCDRRT KTKKRAARAA KGEGRARYGC
101: AFEEEEEGIA APNRLVWSKV KGYPWWPAQV LDPADASALA LAERRKDGAV LVANFWQKTF AWVSGAAALC PFRDGFRRFA AVDRAHVQLW GARATMSPFA
201: SALDTALGEV ARRVEAGLSC GCAIGYRVSK KQVIDNPGVR EGAQGAVVDA AFTRDAFRGE AFVEYVSALA VAPLAGADRL ELTVAMAQLT AFTRWRGTRG
301: LPVYTACHGI DGIADGVREG TPARRVTKRG RPKGDNAAEH KRKMSRYCTC DGSASESAED PLEMEEKYEP RPQPASHQTT TKMGRLMSQA AHRMSLSPVS
401: HKADLQANAA AGVTMAKCTG AAAAPSVKPQ NGGLNKDEPL LTGLSLNFTG PDTVPPASDL VKIFSKFGPV VEARPEGLTV SMVIFKRKLD AEAAFSSTPK
501: IRALDPNLVS YRLAYALPAP TPVDSPQSPM NTDEMDHLFV DDDEALQ

Best Arabidopsis Sequence Match ( AT3G09670.1 )
(BLAST)

001: MSTESERIES VSEANASSLE VGNDQMSEAL AGQAQELKTI GDDKEGCGNF ASAGDNGMEK VNGFTNLVKE TESVNGELDL GTRTENVGGE SNQSDKKVLV
101: DSEEVMMVEK RGLLVEKEVE PDMVCSHGAD LSDVKVSDGR LDSEDLVQDR KPDGLEKQGT KVEDLDVVCF MGLEPHESKD ESILDDEIAH VAAKVKISDS
201: DLVWAKVRSH PWWPGQVFDA SAATDKAKKH FKKGSFLVTY FGDCTFAWNE ASRIKPFRQH FSQMAKQSSL PDFIDAIDFA LEEVSRRIEF GLACSCISEE
301: VYQKIKTQNV INPGIREDSS SIHGGDKVSS AVFFEPANLV GYVKRLACSP SYDATDALQL VSQRAQLLAF NRWKGYTDLP EFMTLQGSVE SAPKISPAEE
401: QSSLVEVSDP EPTKSKQVYT KRRKTNLQTE QSSLVEVSDP DKGDCKHDGV FEYEETIVPK KKEKTLAEFI AEKRVSRHNG NTSHEKSGNV PHCEKKRKVV
501: QSKVPKSTKK IKANLQTEDP GSPVSPKNDR KNNLSAGDKI TPQKARKSFG IGASILKVAN QMHCSTPTRL LPCSDSTSKK AAKSNGSGKS LQEKPKAEAL
601: SAREISPSTT LSSPHAASVT KTTSGKSNSV SLDHNLSGEL DQVRKEAPST NLVEDPMLES RDLKDSSKEQ VVHEDKKEAA NVADEKSIMD SNLTGEKISG
701: LDLREQPSNK NCSGGSDSCK EDVSAE

Arabidopsis Description

Tudor/PWWP/MBT superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SF36]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.