Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G077800.1 | Wheat | cytosol | 82.78 | 82.03 |
| TraesCS1A01G059600.1 | Wheat | cytosol | 72.53 | 72.39 |
| TraesCS1D01G060900.1 | Wheat | nucleus | 49.45 | 49.63 |
| HORVU1Hr1G012310.1 | Barley | cytosol, nucleus | 33.7 | 48.55 |
| Os05t0122500-00 | Rice | nucleus | 42.12 | 43.64 |
| EES18937 | Sorghum | nucleus, plastid | 34.8 | 37.55 |
| Zm00001d010984_P001 | Maize | plastid | 34.8 | 37.18 |
| Bra028857.1-P | Field mustard | nucleus | 20.33 | 24.13 |
| CDY04873 | Canola | nucleus | 19.96 | 23.7 |
| CDY55692 | Canola | nucleus | 19.23 | 23.18 |
| KRH32403 | Soybean | nucleus | 21.98 | 17.88 |
| AT5G02950.2 | Thale cress | nucleus | 20.51 | 17.72 |
| CDY07935 | Canola | nucleus | 17.58 | 16.99 |
| PGSC0003DMT400087303 | Potato | nucleus | 22.89 | 16.21 |
| GSMUA_Achr9P04320_001 | Banana | nucleus | 22.53 | 16.1 |
| CDX73990 | Canola | nucleus | 17.03 | 16.06 |
| GSMUA_Achr10P... | Banana | nucleus | 20.15 | 15.51 |
| AT3G09670.1 | Thale cress | nucleus | 19.96 | 15.01 |
| KRH19811 | Soybean | nucleus | 20.7 | 14.52 |
| TraesCS1D01G287200.1 | Wheat | nucleus | 20.15 | 14.49 |
| VIT_08s0040g02440.t01 | Wine grape | nucleus | 21.61 | 13.29 |
| Solyc04g049950.1.1 | Tomato | nucleus | 10.99 | 13.24 |
| Bra001301.1-P | Field mustard | nucleus | 8.06 | 13.02 |
| KRH34572 | Soybean | nucleus | 19.05 | 12.78 |
| GSMUA_Achr11P... | Banana | nucleus | 16.3 | 12.19 |
| KRH70385 | Soybean | nucleus | 22.53 | 12.12 |
| KRH33337 | Soybean | nucleus | 22.34 | 11.97 |
| TraesCS1D01G287400.1 | Wheat | nucleus | 20.88 | 9.48 |
| TraesCS1D01G097400.1 | Wheat | plastid | 15.57 | 8.16 |
| PGSC0003DMT400027409 | Potato | nucleus | 22.89 | 7.55 |
| VIT_13s0019g03620.t01 | Wine grape | nucleus | 23.99 | 6.98 |
| KRG92228 | Soybean | nucleus | 20.15 | 6.3 |
| Solyc09g007340.2.1 | Tomato | cytosol | 22.34 | 5.76 |
| TraesCS3D01G543800.1 | Wheat | nucleus | 14.65 | 5.23 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G060800.1 | EnsemblPlantsGene:TraesCS1D01G060800 | Gene3D:2.30.30.140 | InterPro:IPR000313 | InterPro:PWWP_dom | PANTHER:PTHR42851 |
| PANTHER:PTHR42851:SF5 | PFAM:PF00855 | PFscan:PS50812 | SEG:seg | SMART:SM00293 | SUPFAM:SSF63748 |
| TIGR:cd05162 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr1D:-:41156022..41158481
Molecular Weight (calculated)
58608.4 Da
IEP (calculated)
8.310
GRAVY (calculated)
-0.333
Length
546 amino acids
Sequence
(BLAST)
(BLAST)
001: MAYFCTLSGE DLSLSLPTRG DERTRALAGH MASAVAPEEG AGAKNVDEGN GSAVGRPSRH RALRPDAAEV LQEGGCDRRT KTKKQAARAA KGEGRARYGC
101: AFEEEEGIAA PNRLVWSKVK GYPWWPAQVF DPADASALAL AVRRKDGAVL VANFWQKTFA WVSGAASLRP FRDGFQRFAA VDRAHVQLWG ARSTMSPFAS
201: ALDTALGEVA RRVEAGLSCD CAIGYRVSKK QVIDNPGVRE GAQGAVVDDA FTRDAFRGEA FVDYVSALAV APLAGANRLE LTVAMAQLTA FTRWRGTRGL
301: PVYTACHGID DIADGVREGT LARRATKRGR PKGDNAEGKR KMSRYCTCDG SASESADDPL EMELESYEPR PRPVSHQTTT KMGKLMSQAA RRMSLSPVSH
401: IADPQANASA GVMMTRCTGA AAAPSVKLQN GGLNKDEPLL TGLSLNFSGP DTVPPASDLV KIFSKFGPVV EARPEGLTVS MVIFKRKLDA EVAFSSTPKI
501: RALDPNLVSY RLAYSLPAPT PVDSPQSPMN TDEMDHLFVD DDEALQ
101: AFEEEEGIAA PNRLVWSKVK GYPWWPAQVF DPADASALAL AVRRKDGAVL VANFWQKTFA WVSGAASLRP FRDGFQRFAA VDRAHVQLWG ARSTMSPFAS
201: ALDTALGEVA RRVEAGLSCD CAIGYRVSKK QVIDNPGVRE GAQGAVVDDA FTRDAFRGEA FVDYVSALAV APLAGANRLE LTVAMAQLTA FTRWRGTRGL
301: PVYTACHGID DIADGVREGT LARRATKRGR PKGDNAEGKR KMSRYCTCDG SASESADDPL EMELESYEPR PRPVSHQTTT KMGKLMSQAA RRMSLSPVSH
401: IADPQANASA GVMMTRCTGA AAAPSVKLQN GGLNKDEPLL TGLSLNFSGP DTVPPASDLV KIFSKFGPVV EARPEGLTVS MVIFKRKLDA EVAFSSTPKI
501: RALDPNLVSY RLAYSLPAPT PVDSPQSPMN TDEMDHLFVD DDEALQ
001: MSTESERIES VSEANASSLE VGNDQMSEAL AGQAQELKTI GDDKEGCGNF ASAGDNGMEK VNGFTNLVKE TESVNGELDL GTRTENVGGE SNQSDKKVLV
101: DSEEVMMVEK RGLLVEKEVE PDMVCSHGAD LSDVKVSDGR LDSEDLVQDR KPDGLEKQGT KVEDLDVVCF MGLEPHESKD ESILDDEIAH VAAKVKISDS
201: DLVWAKVRSH PWWPGQVFDA SAATDKAKKH FKKGSFLVTY FGDCTFAWNE ASRIKPFRQH FSQMAKQSSL PDFIDAIDFA LEEVSRRIEF GLACSCISEE
301: VYQKIKTQNV INPGIREDSS SIHGGDKVSS AVFFEPANLV GYVKRLACSP SYDATDALQL VSQRAQLLAF NRWKGYTDLP EFMTLQGSVE SAPKISPAEE
401: QSSLVEVSDP EPTKSKQVYT KRRKTNLQTE QSSLVEVSDP DKGDCKHDGV FEYEETIVPK KKEKTLAEFI AEKRVSRHNG NTSHEKSGNV PHCEKKRKVV
501: QSKVPKSTKK IKANLQTEDP GSPVSPKNDR KNNLSAGDKI TPQKARKSFG IGASILKVAN QMHCSTPTRL LPCSDSTSKK AAKSNGSGKS LQEKPKAEAL
601: SAREISPSTT LSSPHAASVT KTTSGKSNSV SLDHNLSGEL DQVRKEAPST NLVEDPMLES RDLKDSSKEQ VVHEDKKEAA NVADEKSIMD SNLTGEKISG
701: LDLREQPSNK NCSGGSDSCK EDVSAE
101: DSEEVMMVEK RGLLVEKEVE PDMVCSHGAD LSDVKVSDGR LDSEDLVQDR KPDGLEKQGT KVEDLDVVCF MGLEPHESKD ESILDDEIAH VAAKVKISDS
201: DLVWAKVRSH PWWPGQVFDA SAATDKAKKH FKKGSFLVTY FGDCTFAWNE ASRIKPFRQH FSQMAKQSSL PDFIDAIDFA LEEVSRRIEF GLACSCISEE
301: VYQKIKTQNV INPGIREDSS SIHGGDKVSS AVFFEPANLV GYVKRLACSP SYDATDALQL VSQRAQLLAF NRWKGYTDLP EFMTLQGSVE SAPKISPAEE
401: QSSLVEVSDP EPTKSKQVYT KRRKTNLQTE QSSLVEVSDP DKGDCKHDGV FEYEETIVPK KKEKTLAEFI AEKRVSRHNG NTSHEKSGNV PHCEKKRKVV
501: QSKVPKSTKK IKANLQTEDP GSPVSPKNDR KNNLSAGDKI TPQKARKSFG IGASILKVAN QMHCSTPTRL LPCSDSTSKK AAKSNGSGKS LQEKPKAEAL
601: SAREISPSTT LSSPHAASVT KTTSGKSNSV SLDHNLSGEL DQVRKEAPST NLVEDPMLES RDLKDSSKEQ VVHEDKKEAA NVADEKSIMD SNLTGEKISG
701: LDLREQPSNK NCSGGSDSCK EDVSAE
Arabidopsis Description
Tudor/PWWP/MBT superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SF36]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.