Factsheet for VIT_08s0040g02440.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY55692	Canola	nucleus	19.26	37.75
Bra028857.1-P	Field mustard	nucleus	19.48	37.61
CDY04873	Canola	nucleus	19.48	37.61
KRH32403	Soybean	nucleus	26.91	35.62
KRH19811	Soybean	nucleus	28.94	33.03
PGSC0003DMT400087303	Potato	nucleus	25.79	29.7
AT5G02950.2	Thale cress	nucleus	20.72	29.11
CDX73990	Canola	nucleus	17.79	27.29
HORVU3Hr1G117740.2	Barley	nucleus	5.74	26.56
CDY07935	Canola	nucleus	15.88	24.96
Os05t0463500-01	Rice	nucleus	12.73	24.62
GSMUA_Achr9P04320_001	Banana	nucleus	21.17	24.61
Os05t0122500-00	Rice	nucleus	14.08	23.72
GSMUA_Achr8P02720_001	Banana	nucleus	22.18	23.42
HORVU1Hr1G071710.17	Barley	endoplasmic reticulum	14.41	23.23
AT3G09670.1	Thale cress	nucleus	18.81	23.0
TraesCS1A01G059600.1	Wheat	cytosol	14.08	22.85
TraesCS1A01G059700.1	Wheat	cytosol	9.35	22.31
EES18937	Sorghum	nucleus, plastid	12.5	21.94
Zm00001d010984_P001	Maize	plastid	12.61	21.92
TraesCS1B01G077900.1	Wheat	nucleus	13.63	21.72
TraesCS1D01G060800.1	Wheat	cytosol	13.29	21.61
Bra001301.1-P	Field mustard	nucleus	8.11	21.3
TraesCS1B01G077800.1	Wheat	cytosol	13.18	21.23
GSMUA_Achr10P...	Banana	nucleus	16.78	21.02
TraesCS1D01G060900.1	Wheat	nucleus	12.84	20.96
HORVU1Hr1G012310.1	Barley	cytosol, nucleus	8.67	20.32
TraesCS1B01G297600.1	Wheat	nucleus	16.89	20.24
TraesCS1A01G288200.1	Wheat	nucleus	16.78	19.58
TraesCS1D01G287200.1	Wheat	nucleus	16.67	19.5
GSMUA_Achr11P...	Banana	nucleus	15.32	18.63
HORVU1Hr1G012320.1	Barley	cytosol, nucleus	7.77	18.35
Zm00001d041940_P001	Maize	nucleus	17.34	18.18
Zm00001d011770_P001	Maize	nucleus	18.13	18.11
KXG34235	Sorghum	nucleus	17.91	17.81
VIT_14s0066g01120.t01	Wine grape	nucleus	19.48	17.78
Os05t0463400-01	Rice	nucleus	11.49	16.43
TraesCS1B01G297800.1	Wheat	nucleus	22.07	16.39
Os11t0303500-01	Rice	nucleus	13.06	16.02
TraesCS1A01G288400.1	Wheat	nucleus	21.51	15.93
TraesCS1D01G287400.1	Wheat	nucleus	21.4	15.79
HORVU1Hr1G071590.1	Barley	nucleus	21.28	14.81
Zm00001d038396_P003	Maize	nucleus	22.07	14.52
VIT_13s0019g03620.t01	Wine grape	nucleus	30.18	14.28
OQU78150	Sorghum	nucleus	22.07	14.15
GSMUA_Achr5P29300_001	Banana	nucleus	23.76	13.34
Zm00001d010556_P002	Maize	nucleus	22.41	10.72
Solyc09g007340.2.1	Tomato	cytosol	25.34	10.62
VIT_14s0060g02400.t01	Wine grape	nucleus	14.86	10.55
HORVU3Hr1G117730.2	Barley	nucleus, plastid	13.96	7.06
TraesCS3B01G603600.1	Wheat	nucleus	11.71	6.86
TraesCS3B01G603700.1	Wheat	nucleus	1.46	6.74
TraesCS3D01G543800.1	Wheat	nucleus	10.25	5.95
VIT_17s0000g08510.t01	Wine grape	nucleus	6.08	4.37

Protein Annotations

EntrezGene:104880050	Gene3D:2.30.30.140	MapMan:35.2	ProteinID:CCB57039	ProteinID:CCB57039.1	UniProt:F6HQZ0
EMBL:FN596008	InterPro:IPR000313	PFAM:PF00855	PFscan:PS50812	PANTHER:PTHR42851	PANTHER:PTHR42851:SF2
InterPro:PWWP_dom	SMART:SM00293	SUPFAM:SSF63748	TIGR:TC58866	UniParc:UPI0001983CEC	ArrayExpress:VIT_08s0040g02440
EnsemblPlantsGene:VIT_08s0040g02440	EnsemblPlants:VIT_08s0040g02440.t01	unigene:Vvi.18491	RefSeq:XP_010653513.1	RefSeq:XP_010653514.1	SEG:seg

Description

No Description!

Coordinates

chr8:-:13507818..13510592

Molecular Weight (calculated)

98211.4 Da

IEP (calculated)

5.004

GRAVY (calculated)

-0.537

Length

888 amino acids

Sequence
(BLAST)

001: MPGNSGVIDL NSDAVSGDQS SDVDGGDVSD LLIRVGVSGV SNDQGGVIGG MTDRVGDIGE GEDSGRVVDG LVKEGLDRVM GSANERSEVE EGRGKMPVID
101: DLEWLVLGSK GGVVNTSALC GKSLFSESNE LENEVGRGSN EVNTLGVAGE ENLIDVEVLA DKMMDKRLEN EKEEEVFQVA ETSINKIFGV QVSEVGLSTV
201: NESNTVNLVV DLNPYIDADE NQKSRASISN KGKENVDCCI NQVELNGNHD LVIKEQVKNV EKAKNLQQQN VKCAASDLEF EVSDLVWGKV RSHPWWPGQI
301: FDPLDSSEKA MKYFKKDSFL IAYFGDQTFA WNEVTQLKPF RAHFSQMEKQ SNLEAFHHAV DCALDEVARR VVFGLTCSCV SEEVRRKIKT QTIVNAGIQK
401: KSSRRDGGDR YLNASSFEPA ELLNYMKILA QSSCDEVDRL EFVISQAQLS AFHHWKGFSQ LPEFEMLGGL LEDDENLPLL EAKRHFGEAI EDVIEDFKDH
501: EQVLPRKRKS KGQNSSSHEH KVLSGDSMHP SKKQRSLMDL MAGNCSYLKN IEKSSSDKKL KEIGTLLDDS AVTDRGRFAA PHSQKTLGVG DSICRVANQL
601: NGSTPMLKHE KPASSGKSQK RKVIPIECFS PEEMLSQIRL ASIHPMEGYK FLTSSICFLS EFRNFVCLDH PRSLKDKQSL KEVSSSKSEK STLEAVEASG
701: SKYVKDSYWT DRMIQSFPEE ETIVNLNETG ESVRETQGEM AVVNVEPEAV SESRHQTAGQ NPEKEAEKPV DHMSESGMEE LSPTALILNF ADLNSVPSET
801: NLNRIFSRYG PLNESETEVL KKSIRAKVVF KRSSDAETAF SSSGKFSIFG PSLISYRLKY LPARLHKASS SSTKRRRKDA TAMEGNAT

Best Arabidopsis Sequence Match ( AT3G09670.1 )
(BLAST)

001: MSTESERIES VSEANASSLE VGNDQMSEAL AGQAQELKTI GDDKEGCGNF ASAGDNGMEK VNGFTNLVKE TESVNGELDL GTRTENVGGE SNQSDKKVLV
101: DSEEVMMVEK RGLLVEKEVE PDMVCSHGAD LSDVKVSDGR LDSEDLVQDR KPDGLEKQGT KVEDLDVVCF MGLEPHESKD ESILDDEIAH VAAKVKISDS
201: DLVWAKVRSH PWWPGQVFDA SAATDKAKKH FKKGSFLVTY FGDCTFAWNE ASRIKPFRQH FSQMAKQSSL PDFIDAIDFA LEEVSRRIEF GLACSCISEE
301: VYQKIKTQNV INPGIREDSS SIHGGDKVSS AVFFEPANLV GYVKRLACSP SYDATDALQL VSQRAQLLAF NRWKGYTDLP EFMTLQGSVE SAPKISPAEE
401: QSSLVEVSDP EPTKSKQVYT KRRKTNLQTE QSSLVEVSDP DKGDCKHDGV FEYEETIVPK KKEKTLAEFI AEKRVSRHNG NTSHEKSGNV PHCEKKRKVV
501: QSKVPKSTKK IKANLQTEDP GSPVSPKNDR KNNLSAGDKI TPQKARKSFG IGASILKVAN QMHCSTPTRL LPCSDSTSKK AAKSNGSGKS LQEKPKAEAL
601: SAREISPSTT LSSPHAASVT KTTSGKSNSV SLDHNLSGEL DQVRKEAPST NLVEDPMLES RDLKDSSKEQ VVHEDKKEAA NVADEKSIMD SNLTGEKISG
701: LDLREQPSNK NCSGGSDSCK EDVSAE

Arabidopsis Description

Tudor/PWWP/MBT superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SF36]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.