Factsheet for TraesCS1B01G077800.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G060800.1	Wheat	cytosol	82.03	82.78
TraesCS1A01G059600.1	Wheat	cytosol	75.68	76.23
HORVU1Hr1G012310.1	Barley	cytosol, nucleus	36.48	53.03
TraesCS1B01G077900.1	Wheat	nucleus	45.73	45.24
Os05t0122500-00	Rice	nucleus	40.29	42.13
EES18937	Sorghum	nucleus, plastid	33.94	36.96
Zm00001d010984_P001	Maize	plastid	32.85	35.42
Bra028857.1-P	Field mustard	nucleus	18.69	22.39
CDY04873	Canola	nucleus	18.33	21.96
CDY55692	Canola	nucleus	17.97	21.85
KRH32403	Soybean	nucleus	21.78	17.88
AT5G02950.2	Thale cress	nucleus	19.24	16.77
CDY07935	Canola	nucleus	16.88	16.46
PGSC0003DMT400087303	Potato	nucleus	22.32	15.95
KRH19811	Soybean	nucleus	21.78	15.42
CDX73990	Canola	nucleus	16.15	15.37
GSMUA_Achr9P04320_001	Banana	nucleus	21.23	15.31
GSMUA_Achr10P...	Banana	nucleus	19.06	14.81
TraesCS1B01G297600.1	Wheat	nucleus	19.06	14.17
AT3G09670.1	Thale cress	nucleus	18.51	14.05
VIT_08s0040g02440.t01	Wine grape	nucleus	21.23	13.18
Solyc04g049950.1.1	Tomato	nucleus	10.34	12.58
KRH34572	Soybean	nucleus	18.15	12.29
GSMUA_Achr11P...	Banana	nucleus	15.97	12.05
KRH70385	Soybean	nucleus	22.14	12.02
KRH33337	Soybean	nucleus	21.6	11.68
Bra001301.1-P	Field mustard	nucleus	7.08	11.54
TraesCS1B01G297800.1	Wheat	nucleus	20.51	9.45
TraesCS3B01G603600.1	Wheat	nucleus	22.5	8.17
TraesCS1B01G116700.1	Wheat	plastid	14.34	7.32
PGSC0003DMT400027409	Potato	nucleus	21.78	7.25
VIT_13s0019g03620.t01	Wine grape	nucleus	23.05	6.77
KRG92228	Soybean	nucleus	20.51	6.48
TraesCS3B01G603700.1	Wheat	nucleus	2.18	6.22
Solyc09g007340.2.1	Tomato	cytosol	22.32	5.8

Protein Annotations

EnsemblPlants:TraesCS1B01G077800.1	EnsemblPlantsGene:TraesCS1B01G077800	Gene3D:2.30.30.140	InterPro:IPR000313	InterPro:PWWP_dom	PANTHER:PTHR42851
PANTHER:PTHR42851:SF5	PFAM:PF00855	PFscan:PS50812	SEG:seg	SMART:SM00293	SUPFAM:SSF63748
TIGR:cd05162	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr1B:-:60724234..60725889

Molecular Weight (calculated)

59111.9 Da

IEP (calculated)

8.616

GRAVY (calculated)

-0.400

Length

551 amino acids

Sequence
(BLAST)

001: MAYFCTLSGA DLSLSLPTRG DERTGALAGH MASALAPEEG AGAKNVGEGN GSAVGRSSRH RSLRSDAAEV LQEGGCDRRT KTKKRAARAP KGEGRARYGC
101: AFEEEEEGIA APNRLVWSKV KGYPWWPAQV FDPKDASALA LAERRKDGAV LVTNFWQKTF AWVSGAASLR PFRDGFQRFA AVDRAHVQLW GARATMSPFA
201: SALDTALSEV ARRVEAGLSC DCAIGNRVSK KQVIDNPGVR EGAHGAVVDA AFTRDAFRGE AFVEYVSALA VAPLAGTDRL ELTVAMAQLT AFTRWRGTRG
301: LPVYTACHGI DDIADGVREG TPARRATKRG RPKGDNAAKG KRKMSRYCTC DGSASESAED PLEMEENYEP RPQPVSHQTT TKMGRLMSQA ARRMSLSPVS
401: HKADPQANAG VTMTRCTGAA AADHTTAAPS VKPQNGGLNK DEPLLTGLSL NFSGPDTIPP ASDLVKIFSK FGPVVEVRPE GLTVSMVIFK RKLDAEAAFS
501: STPKIRALDP NLVSYRLAYS LPAPMPVDSP QSPMNTDEMD HLFVDDDEAL Q

Best Arabidopsis Sequence Match ( AT3G09670.1 )
(BLAST)

001: MSTESERIES VSEANASSLE VGNDQMSEAL AGQAQELKTI GDDKEGCGNF ASAGDNGMEK VNGFTNLVKE TESVNGELDL GTRTENVGGE SNQSDKKVLV
101: DSEEVMMVEK RGLLVEKEVE PDMVCSHGAD LSDVKVSDGR LDSEDLVQDR KPDGLEKQGT KVEDLDVVCF MGLEPHESKD ESILDDEIAH VAAKVKISDS
201: DLVWAKVRSH PWWPGQVFDA SAATDKAKKH FKKGSFLVTY FGDCTFAWNE ASRIKPFRQH FSQMAKQSSL PDFIDAIDFA LEEVSRRIEF GLACSCISEE
301: VYQKIKTQNV INPGIREDSS SIHGGDKVSS AVFFEPANLV GYVKRLACSP SYDATDALQL VSQRAQLLAF NRWKGYTDLP EFMTLQGSVE SAPKISPAEE
401: QSSLVEVSDP EPTKSKQVYT KRRKTNLQTE QSSLVEVSDP DKGDCKHDGV FEYEETIVPK KKEKTLAEFI AEKRVSRHNG NTSHEKSGNV PHCEKKRKVV
501: QSKVPKSTKK IKANLQTEDP GSPVSPKNDR KNNLSAGDKI TPQKARKSFG IGASILKVAN QMHCSTPTRL LPCSDSTSKK AAKSNGSGKS LQEKPKAEAL
601: SAREISPSTT LSSPHAASVT KTTSGKSNSV SLDHNLSGEL DQVRKEAPST NLVEDPMLES RDLKDSSKEQ VVHEDKKEAA NVADEKSIMD SNLTGEKISG
701: LDLREQPSNK NCSGGSDSCK EDVSAE

Arabidopsis Description

Tudor/PWWP/MBT superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SF36]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.