CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH32403	Soybean	nucleus	59.77	69.3
CDY55692	Canola	nucleus	21.34	36.64
Bra028857.1-P	Field mustard	nucleus	20.95	35.43
CDY04873	Canola	nucleus	20.95	35.43
VIT_08s0040g02440.t01	Wine grape	nucleus	33.03	28.94
HORVU3Hr1G117740.2	Barley	nucleus	6.81	27.6
PGSC0003DMT400087303	Potato	nucleus	27.12	27.37
AT5G02950.2	Thale cress	nucleus	22.11	27.22
HORVU1Hr1G071710.17	Barley	endoplasmic reticulum	17.87	25.23
CDY07935	Canola	nucleus	17.99	24.78
Os05t0463500-01	Rice	nucleus	14.52	24.62
Os05t0122500-00	Rice	nucleus	16.07	23.72
CDX73990	Canola	nucleus	17.22	23.14
GSMUA_Achr9P04320_001	Banana	nucleus	22.49	22.91
TraesCS1A01G059700.1	Wheat	cytosol	10.93	22.85
TraesCS1A01G059600.1	Wheat	cytosol	15.81	22.49
EES18937	Sorghum	nucleus, plastid	14.52	22.33
TraesCS1B01G077800.1	Wheat	cytosol	15.42	21.78
TraesCS1B01G077900.1	Wheat	nucleus	15.3	21.36
KRH34572	Soybean	nucleus	21.85	20.88
HORVU1Hr1G012310.1	Barley	cytosol, nucleus	10.15	20.84
AT3G09670.1	Thale cress	nucleus	19.41	20.8
Zm00001d010984_P001	Maize	plastid	13.62	20.74
TraesCS1D01G060800.1	Wheat	cytosol	14.52	20.7
TraesCS1D01G060900.1	Wheat	nucleus	14.27	20.4
TraesCS1B01G297600.1	Wheat	nucleus	19.41	20.38
TraesCS1A01G288200.1	Wheat	nucleus	19.79	20.24
TraesCS1D01G287200.1	Wheat	nucleus	19.54	20.03
KRH70385	Soybean	nucleus	25.84	19.8
KRH33337	Soybean	nucleus	25.84	19.73
GSMUA_Achr8P02720_001	Banana	nucleus	20.82	19.26
GSMUA_Achr10P...	Banana	nucleus	17.48	19.18
HORVU1Hr1G012320.1	Barley	cytosol, nucleus	9.13	18.88
Zm00001d041940_P001	Maize	nucleus	19.41	17.83
GSMUA_Achr11P...	Banana	nucleus	16.58	17.67
Zm00001d011770_P001	Maize	nucleus	19.79	17.32
Os05t0463400-01	Rice	nucleus	13.75	17.23
Bra001301.1-P	Field mustard	nucleus	7.46	17.16
KXG34235	Sorghum	nucleus	19.15	16.69
KRH56588	Soybean	nucleus	15.04	16.39
TraesCS1B01G297800.1	Wheat	nucleus	24.68	16.05
TraesCS1D01G287400.1	Wheat	nucleus	23.14	14.96
TraesCS1A01G288400.1	Wheat	nucleus	22.49	14.6
HORVU1Hr1G071590.1	Barley	nucleus	23.65	14.42
Os11t0303500-01	Rice	nucleus	13.37	14.36
KRH07190	Soybean	nucleus	17.22	14.3
KRG94143	Soybean	nucleus	16.84	14.13
Zm00001d038396_P003	Maize	nucleus	23.01	13.26
OQU78150	Sorghum	nucleus	22.88	12.85
GSMUA_Achr5P29300_001	Banana	nucleus	24.04	11.82
KRG93266	Soybean	nucleus	16.07	11.39
KRH33902	Soybean	nucleus	14.14	10.53
Solyc09g007340.2.1	Tomato	cytosol	27.51	10.1
KRG96822	Soybean	nucleus	13.88	10.05
KRG92228	Soybean	nucleus	22.36	9.97
KRG92886	Soybean	nucleus	13.5	9.94
Zm00001d010556_P002	Maize	nucleus	23.01	9.64
KRH17636	Soybean	nucleus	7.2	7.51
TraesCS3B01G603700.1	Wheat	nucleus	1.67	6.74
TraesCS3B01G603600.1	Wheat	nucleus	13.11	6.72
HORVU3Hr1G117730.2	Barley	nucleus, plastid	14.91	6.6
KRG90051	Soybean	nucleus	6.43	6.49
TraesCS3D01G543800.1	Wheat	nucleus	11.7	5.95

Protein Annotations

Gene3D:2.30.30.140	MapMan:35.2	UniProt:A0A0R0GVB6	EMBL:ACUP02008206	EMBL:ACUP02008207	EnsemblPlantsGene:GLYMA_13G137000
GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	InterPro:IPR000313	EnsemblPlants:KRH19811	ProteinID:KRH19811
ProteinID:KRH19811.1	PFAM:PF00855	PFscan:PS50812	PANTHER:PTHR42851	PANTHER:PTHR42851:SF2	InterPro:PWWP_dom
InterPro:RBD_domain_sf	SMART:SM00293	SUPFAM:SSF54928	SUPFAM:SSF63748	UniParc:UPI0006EDC2D8	SEG:seg

Description

hypothetical protein

Coordinates

chr13:+:24968461..24971841

Molecular Weight (calculated)

86810.9 Da

IEP (calculated)

5.037

GRAVY (calculated)

-0.489

Length

778 amino acids

Sequence
(BLAST)

001: MKNEKSGIEC SGGVLFDYGG VEPDGGLVIE FNDGFRSELG CENARDVAEN GLLSFALNNV TQGGDNDAVE CTQEVKNDGL VNLSAVVEND GKRNGADSLV
101: TKDGMEDSRA IEVATYQLQD GIPCMEAVDV NAEESLHVKD LSRNCLELKP SCEPAFQVDA NVDVMQNQTV VVDVSEGLFE NIQNECHGFD LVVDLNSYKS
201: MHKVGTYWGS VSSEMNFCVS DLVWGKVTGH PWWPGQIFDA SAASEKAKKH LKEGCHLIAY FGDGTFAWND VSMLKPFQTH FSQMEKLSNL ENFHHAVDCA
301: LDEVSRRVEF SLSCHCMPED VLSKIKTQVI SNAGINNQSC RRNGGDRIMN AMSFEPMKLV NFVKSLAQSP LVESDRLDFV IARSQLSAFY CSKGYSQLPE
401: FPVLGVLFEN DMETLLMREK EQCDYQTHVS FLQQDHKHIS GDSKWHGKKL KLLSDLMSEK GFCISNGEGT SEQEAKSVPQ RRGRKRKTAF NTSEDYFHNS
501: QNGRLTQLQY ASTNDMRSQL CLAAKDPTGE SCSSDMVHFF AEFRKFISHD YYASLDQEMS LERMNYDETG VTSTAALASM TPAMEPCSDS YWTDRIIQSI
601: PKELSLTKYQ NERVVFLPET LTEANPLSFK LQPSAETTTD LCYKQQDTDR NLGSESSKLV EHLDGSSKEN FCPTALTLKF TNFDSVPSTT DLNNIFGRFG
701: PLIESKTELL ERTNRARVVF QRRSDAETAF SSAGKYSIFG PSLVSYRLKI LPRKPPQGTG KRGRKRRKET SSVDGTAV

Best Arabidopsis Sequence Match ( AT5G02950.1 )
(BLAST)

001: MSTEPEGVES DSNADFAINA SSFDYGMAHT SETLADPMSF QAQDLVVNLT GVERKVFVSA RDDKDSLCNG VDFDADSDLL KNKDKKGFSK ENLKLFDSDL
101: VWAKLRSYPW WPGLVFDKSV ASKAAMRHFK KGNVLVAYFG DCTFAWNNAS QIKPFHQNFS QMQEQSNSAE FRDAIDCALD EVSRRVEFGL SCSCVSEEAY
201: NKLKTQNIIN AGIREDSSVR YGGDKLSDGI SFEPAKLVDY MKHLACFPCY DATEKLQFVI NRAQVLAFQQ WKDYSHFIDY ETFVRSVESA ATLASLPEVN
301: MDEGISAKKR KTDYKDNAEQ TKEKTLSDLT VKKRCGSRST EKLDGKSHSE KKRKVESSES GKSEKRIKKS QQKEDSVSKH SNEESLLSVG DTNKLQKTAE
401: PCHGTGVENE MNSLTPTLKP CRASKSTEVE NEKTKKPRHQ ELAERKISSP DEMLSSLHAA NTSTGIPDSI NIDPSNYEDF EKFINELFCS KLNGDSKKAS
501: ITETSEPCDK KDSAEEEILP ANKEITGSGS KEQIGLKDCS ADSLPPYALV LNFADSGSVP SEEKLNEIFK RYGPLHESKT KVTMKGKRAK VVFKRGEDAK
601: TAFSSAGKYS IFGPSLLSYR LEYVCPKRKK TT

Arabidopsis Description

Tudor/PWWP/MBT superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LYZ0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.