CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

nucleus 5
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d010984_P001	Maize	plastid	54.15	53.62
Os05t0122500-00	Rice	nucleus	38.93	37.38
TraesCS1D01G060900.1	Wheat	nucleus	38.14	35.48
TraesCS1D01G060800.1	Wheat	cytosol	37.55	34.8
TraesCS1A01G059700.1	Wheat	cytosol	25.49	34.68
TraesCS1B01G077900.1	Wheat	nucleus	37.75	34.29
TraesCS1B01G077800.1	Wheat	cytosol	36.96	33.94
TraesCS1A01G059600.1	Wheat	cytosol	35.57	32.91
HORVU1Hr1G012320.1	Barley	cytosol, nucleus	22.33	30.05
HORVU1Hr1G012310.1	Barley	cytosol, nucleus	21.54	28.76
CDY55692	Canola	nucleus	20.75	23.18
Bra028857.1-P	Field mustard	nucleus	20.75	22.83
CDY04873	Canola	nucleus	20.75	22.83
KXG34235	Sorghum	nucleus	32.61	18.48
AT5G02950.2	Thale cress	nucleus	21.94	17.56
KRH32403	Soybean	nucleus	22.92	17.29
CDX73990	Canola	nucleus	17.98	15.72
CDY07935	Canola	nucleus	17.39	15.58
KRH19811	Soybean	nucleus	22.33	14.52
PGSC0003DMT400087303	Potato	nucleus	21.74	14.27
GSMUA_Achr9P04320_001	Banana	nucleus	21.34	14.14
GSMUA_Achr10P...	Banana	nucleus	19.57	13.96
Solyc04g049950.1.1	Tomato	nucleus	11.46	12.8
AT3G09670.1	Thale cress	nucleus	18.18	12.67
VIT_08s0040g02440.t01	Wine grape	nucleus	21.94	12.5
GSMUA_Achr11P...	Banana	nucleus	17.79	12.33
KRH34572	Soybean	nucleus	19.17	11.92
KRH70385	Soybean	nucleus	23.12	11.53
KRH33337	Soybean	nucleus	23.12	11.48
Bra001301.1-P	Field mustard	nucleus	6.92	10.36
OQU77406	Sorghum	nucleus	16.6	8.17
OQU78150	Sorghum	nucleus	21.34	7.8
PGSC0003DMT400027409	Potato	nucleus	23.72	7.25
VIT_13s0019g03620.t01	Wine grape	nucleus	23.32	6.29
KRG92228	Soybean	nucleus	20.16	5.85
Solyc09g007340.2.1	Tomato	cytosol	21.15	5.05

Protein Annotations

EnsemblPlants:EES18937	EnsemblPlantsGene:SORBI_3009G025300	Gene3D:2.30.30.140	InterPro:IPR000313	InterPro:PWWP_dom	ncoils:Coil
PANTHER:PTHR42851	PANTHER:PTHR42851:SF5	PFAM:PF00855	PFscan:PS50812	ProteinID:EES18937	ProteinID:EES18937.1
RefSeq:XP_002440507.1	SEG:seg	SMART:SM00293	SUPFAM:SSF63748	UniParc:UPI0001A88AF6	UniProt:C5YZ28
MapMan:35.2	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:2250471..2252366

Molecular Weight (calculated)

52973.9 Da

IEP (calculated)

10.121

GRAVY (calculated)

-0.153

Length

506 amino acids

Sequence
(BLAST)

001: MASSAPAEEG DVAATLLGKD ASFGSRSTVL RPGRLRVMHP HVAELLRSPR RHARPAAKPA ATRPTQTLCT ERARYACAFE EDVGGGVAAP GRLVWGKVRD
101: HPWWPAQVFD AADASADARA LRRPRGAVLV AYFWDKTFAW NDAAALLPFR AGFPGLAAMA PVAAAVDAAL AEVARRVAAG LSCCCGGGAS ANYRQVIDNA
201: GVRDGAYGAP VDAAFARGAL QAEALVGYLS ALATKPRAGA DRVDLTVAAA QIEALGRWRR STRGLPEYTV VHGIDGVVTA TAKRRRSSTA GGGSAKRRVT
301: SRSSRSATKG NSARDTGDYE ALEQEDLPLP TPAQQMFTKM GKLMSRAAQQ MSLSPVILNR ANGGNSCPPP PPAVPAPDMA RCAIAADDEQ FPPVSKNNGD
401: HETGLVLNFS SASAVPSARH LTMIFSRFGP VKEVRAENST ALVIFKNSAH ADEAFSGTAK IGSIRASLVS FRITSLLPVP AAAPVDDPPQ PQSMSLDTSS
501: PVAALQ

Best Arabidopsis Sequence Match ( AT3G09670.1 )
(BLAST)

001: MSTESERIES VSEANASSLE VGNDQMSEAL AGQAQELKTI GDDKEGCGNF ASAGDNGMEK VNGFTNLVKE TESVNGELDL GTRTENVGGE SNQSDKKVLV
101: DSEEVMMVEK RGLLVEKEVE PDMVCSHGAD LSDVKVSDGR LDSEDLVQDR KPDGLEKQGT KVEDLDVVCF MGLEPHESKD ESILDDEIAH VAAKVKISDS
201: DLVWAKVRSH PWWPGQVFDA SAATDKAKKH FKKGSFLVTY FGDCTFAWNE ASRIKPFRQH FSQMAKQSSL PDFIDAIDFA LEEVSRRIEF GLACSCISEE
301: VYQKIKTQNV INPGIREDSS SIHGGDKVSS AVFFEPANLV GYVKRLACSP SYDATDALQL VSQRAQLLAF NRWKGYTDLP EFMTLQGSVE SAPKISPAEE
401: QSSLVEVSDP EPTKSKQVYT KRRKTNLQTE QSSLVEVSDP DKGDCKHDGV FEYEETIVPK KKEKTLAEFI AEKRVSRHNG NTSHEKSGNV PHCEKKRKVV
501: QSKVPKSTKK IKANLQTEDP GSPVSPKNDR KNNLSAGDKI TPQKARKSFG IGASILKVAN QMHCSTPTRL LPCSDSTSKK AAKSNGSGKS LQEKPKAEAL
601: SAREISPSTT LSSPHAASVT KTTSGKSNSV SLDHNLSGEL DQVRKEAPST NLVEDPMLES RDLKDSSKEQ VVHEDKKEAA NVADEKSIMD SNLTGEKISG
701: LDLREQPSNK NCSGGSDSCK EDVSAE

Arabidopsis Description

Tudor/PWWP/MBT superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SF36]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.