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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 4
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:nucleus
Plant-mPloc:nucleus
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
 nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
HORVU3Hr1G117740.2 Barley nucleus 8.83 20.83
PGSC0003DMT400027409 Potato nucleus 66.67 18.24
KRH34572 Soybean nucleus 27.37 15.23
KRH70385 Soybean nucleus 31.79 14.19
KRH33337 Soybean nucleus 31.79 14.13
TraesCS1A01G059700.1 Wheat cytosol 9.93 12.1
EES18937 Sorghum nucleus, plastid 12.8 11.46
HORVU1Hr1G071710.17 Barley endoplasmic reticulum 13.69 11.25
Os05t0122500-00 Rice nucleus 13.02 11.2
HORVU1Hr1G012320.1 Barley cytosol, nucleus 9.27 11.17
TraesCS1D01G060800.1 Wheat cytosol 13.24 10.99
GSMUA_Achr8P02720_001 Banana nucleus 19.65 10.58
GSMUA_Achr9P04320_001 Banana nucleus 17.66 10.47
TraesCS1B01G077800.1 Wheat cytosol 12.58 10.34
HORVU1Hr1G012310.1 Barley cytosol, nucleus 8.61 10.29
Os11t0303500-01 Rice nucleus 16.11 10.08
TraesCS1A01G059600.1 Wheat cytosol 12.14 10.05
TraesCS1D01G287200.1 Wheat nucleus 16.78 10.01
Zm00001d010984_P001 Maize plastid 11.26 9.98
TraesCS1B01G297600.1 Wheat nucleus 16.11 9.85
TraesCS1A01G288200.1 Wheat nucleus 16.11 9.59
Solyc02g086750.1.1 Tomato nucleus 17.22 9.34
GSMUA_Achr10P... Banana nucleus 14.35 9.17
KXG34235 Sorghum nucleus 17.66 8.96
TraesCS1B01G297800.1 Wheat nucleus 23.4 8.86
TraesCS1D01G060900.1 Wheat nucleus 10.6 8.82
TraesCS1D01G287400.1 Wheat nucleus 23.18 8.73
Zm00001d011770_P001 Maize nucleus 16.78 8.55
TraesCS1A01G288400.1 Wheat nucleus 22.52 8.51
Zm00001d041940_P001 Maize nucleus 15.89 8.5
VIT_13s0019g03620.t01 Wine grape nucleus 34.22 8.26
TraesCS1B01G077900.1 Wheat nucleus 9.93 8.08
Zm00001d038396_P003 Maize nucleus 24.06 8.07
HORVU1Hr1G071590.1 Barley nucleus 22.74 8.07
OQU78150 Sorghum nucleus 24.06 7.87
KRG92228 Soybean nucleus 28.7 7.45
Solyc01g067040.1.1 Tomato nucleus 9.71 6.51
GSMUA_Achr11P... Banana nucleus 10.15 6.3
Solyc01g099360.2.1 Tomato nucleus 13.91 6.26
Os05t0463400-01 Rice nucleus 8.39 6.12
Zm00001d010556_P002 Maize nucleus 24.72 6.03
GSMUA_Achr5P29300_001 Banana nucleus 19.87 5.69
Os05t0463500-01 Rice nucleus 5.3 5.23
Solyc06g071490.1.1 Tomato nucleus 11.92 4.76
TraesCS3B01G603700.1 Wheat nucleus 1.99 4.66
Solyc09g007340.2.1 Tomato cytosol 20.31 4.34
Solyc04g049930.2.1 Tomato nucleus 7.73 4.33
HORVU3Hr1G117730.2 Barley nucleus, plastid 13.47 3.47
TraesCS3D01G543800.1 Wheat nucleus 11.48 3.4
TraesCS3B01G603600.1 Wheat nucleus 9.49 2.83
Protein Annotations
EnsemblPlants:Solyc04g049950.1.1EnsemblPlantsGene:Solyc04g049950.1PANTHER:PTHR42851PANTHER:PTHR42851:SF4SEG:segUniParc:UPI00027669F2
UniProt:K4BRW8MapMan:35.2::::
Description
No Description!
Coordinates
chr4:+:44888940..44890301
Molecular Weight (calculated)
50101.0 Da
IEP (calculated)
9.243
GRAVY (calculated)
-0.680
Length
453 amino acids
Sequence
(BLAST)
001: MKALALSPTC RADRLDLTIA RAQLVAFCRF KGYRLPPQFL LSGELLENDA DIPHVDSAID DNGHASEGSE QHPTSKVSAR KRKHSSKDSS QNKLKERSLS
101: ELMDNMECEY SPDGEDDLDE KSFTSSKKRK GVDSRTDRSD KKTSAYAPKV LTTASVSPKT SFRIGECIQR VASQLTRSAS LLKGSSDQSG ADVQSQDSPK
201: GKVVIPTELP SANELLSQLQ LVARAPMKGY NLKTITNFFS GFRNSVAVGQ KSMKQNLSAG RAAGGRKKRA SQTVAGFAEE FEFDDVNDSY WTDRVVQNCG
301: EEQPLQNNQS VTVQDPEKSS KPARRSYTRK RKSSVDHDMT PGVPPEDIEK RKHEPAELIL IFAEGSPLPS EMNLNKMFRR FGPLKELETE VHQESSRARV
401: VFKRGSDAEV AHSSVGKFNI FGSRQVTYEL SYTPVISFKP MLLTVTPGLE GVI
Best Arabidopsis Sequence Match ( AT3G54760.2 )
(BLAST)
001: MEEPREESEA VRDCSEPMEE AGKGSGLSSK TETLVDEDAN TDLGVSDKNP NDGGLATVDV DDDDDVKRTD AVTEIECEGD TGTVEVKLND ETAKSEVKSK
101: SGATHETAGE EETENSVANE ATDEKATCEV EDNGGVCDAE QDVETENFQL NPVHGETLSV AEDKADQEKE TTKKIEKDIN EMEVDSKQED EENETEDAKH
201: SESAQVPEES TKLSKEETDE ENQKEENGVA MEIDGVAGEH VEKVVKVGSG SDNACNESAG ASMVQTQDVP IAEADNNESN VVKKMEIDER KDNADMTSDL
301: TGTIESADSA IPNSPTEDAA PGNIQDLKTE TGNVSLKEDK KVTDMAEDVV TADIETESNE ARVGVGAESP AAATDCSKET SDATLGSEEN QQDKDHQCLD
401: KKTADVQDTM IEEDDITHEA PSFDPNQKEN AEMEENHNNF VYADDEAGSD VKTNGVKRKA DVLSEDSPGE GRKTVSFAKV SFAERPSFKI GACIARAASQ
501: MAGSPSVLKG SNFGDETLSV ESFVSQLHCA ATDPVKENVV SDIATGFFLD FRNSSASQQV TTEKVSKKRG RPSNSNVAGT EAFEFEEMGD TYWTDRVIHN
601: GGEGQTPATE KGNYQVVPVE LKPAQVQRTR RPYRRRQSQI SIPHSATKKP ADIDENAPAE IIMNFFETDT IPPEKSLSKM FRHFGPIQEL RTEVDREKNR
701: ARVVFRKGAD AEVAYNSAGR FNIFGTKVVK YELSRNVTET FKVQPYVVSL AEEDAAVCPS S
Arabidopsis Description
Dentin sialophosphoprotein-like protein [Source:UniProtKB/TrEMBL;Acc:Q9M1S4]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.