Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g086750.1.1 | Tomato | nucleus | 8.91 | 8.62 |
| Solyc04g049950.1.1 | Tomato | nucleus | 4.33 | 7.73 |
| Solyc01g099360.2.1 | Tomato | nucleus | 8.79 | 7.05 |
| Solyc01g067040.1.1 | Tomato | nucleus | 4.58 | 5.47 |
| Solyc06g071490.1.1 | Tomato | nucleus | 4.95 | 3.52 |
| Solyc09g007340.2.1 | Tomato | cytosol | 7.8 | 2.97 |
| TraesCS3A01G538200.1 | Wheat | nucleus | 4.58 | 2.37 |
Protein Annotations
| EnsemblPlants:Solyc04g049930.2.1 | EnsemblPlantsGene:Solyc04g049930.2 | SEG:seg | UniParc:UPI00027669F0 | UniProt:K4BRW6 | MapMan:35.2 |
Description
No Description!
Coordinates
chr4:+:44885460..44888223
Molecular Weight (calculated)
86718.5 Da
IEP (calculated)
3.958
GRAVY (calculated)
-0.690
Length
808 amino acids
Sequence
(BLAST)
(BLAST)
001: MVEVVGSDVF VDGVCGDELG QHGSGKVDSL DEDRDFRSSE ARQEDYGNTG NGVEGVFEVA GSSRDVAVAA GTEIVSGVTA FSVVEEVNLS VSEEDVEASN
101: VVMSSKSAAS AYLASVDVAG LFRGVSETVD NESDSRLPSE TTDRVLELVS SRVREEDAEG NVGRSAVSVE GSAELTSQRL DISDDGVWNP GIEPLAESSS
201: FVPQENSNRE TEEANNLRLD SSEKDQSSVR EIIGQASEKD ISSHARNQIT DNPDEGAVSG DSGVLGKSHS EVVTIETNAH DQDRDALGDK DENTHSEVES
301: METDVLEQRD DMGNNDEDSH QDNELVHKRH SEAETMETDV HDKEAVGLGI ENANSHSDVE PMETDVYDQE GGVLFKDTNN NSNAVVELPE KINHEDDQII
401: NMCHQVPAGH DNLGVDIPVS QDSARDCADE MVSLRPNSQF PEDKGEEIKV GSGDSRIAAE HSPGAHDHSL GINIANVPLH PGNQEHSFKE NLAAENGVIG
501: SSCGKANHAE DRELKVDNMH EDKSNFALCT QAETSDCMDI QTSNCTEVYL EGSEVSTCKV SISSDNGSLG GSDELPDVQS KVADGVSEVS HDDLLLPVQA
601: SAHNTRNLDE MEVERVDARM ENDARVGPLE APYEPACQSD GASAEMDKDR DAQLGTTTSS LSCTMGENSL EDETRVSLET MISARDMNTG DETIKVTHLL
701: PESFDGDMSV QHVENESLLL FDNYAGKEGD PQMSAVPSND DVMTEDPEGT SLACQDTSKT SDSNAVNVKS TSLLKERDFE VEAEHKLEAK DTALGEGPVQ
801: ARRCSGAS
101: VVMSSKSAAS AYLASVDVAG LFRGVSETVD NESDSRLPSE TTDRVLELVS SRVREEDAEG NVGRSAVSVE GSAELTSQRL DISDDGVWNP GIEPLAESSS
201: FVPQENSNRE TEEANNLRLD SSEKDQSSVR EIIGQASEKD ISSHARNQIT DNPDEGAVSG DSGVLGKSHS EVVTIETNAH DQDRDALGDK DENTHSEVES
301: METDVLEQRD DMGNNDEDSH QDNELVHKRH SEAETMETDV HDKEAVGLGI ENANSHSDVE PMETDVYDQE GGVLFKDTNN NSNAVVELPE KINHEDDQII
401: NMCHQVPAGH DNLGVDIPVS QDSARDCADE MVSLRPNSQF PEDKGEEIKV GSGDSRIAAE HSPGAHDHSL GINIANVPLH PGNQEHSFKE NLAAENGVIG
501: SSCGKANHAE DRELKVDNMH EDKSNFALCT QAETSDCMDI QTSNCTEVYL EGSEVSTCKV SISSDNGSLG GSDELPDVQS KVADGVSEVS HDDLLLPVQA
601: SAHNTRNLDE MEVERVDARM ENDARVGPLE APYEPACQSD GASAEMDKDR DAQLGTTTSS LSCTMGENSL EDETRVSLET MISARDMNTG DETIKVTHLL
701: PESFDGDMSV QHVENESLLL FDNYAGKEGD PQMSAVPSND DVMTEDPEGT SLACQDTSKT SDSNAVNVKS TSLLKERDFE VEAEHKLEAK DTALGEGPVQ
801: ARRCSGAS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.