Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400063505 | Potato | nucleus | 29.2 | 78.19 |
| KRH33902 | Soybean | nucleus | 30.59 | 29.47 |
| CDX99976 | Canola | nucleus | 27.31 | 29.38 |
| KRG96822 | Soybean | nucleus | 31.28 | 29.3 |
| CDY19729 | Canola | nucleus | 29.59 | 29.04 |
| Bra036620.1-P | Field mustard | nucleus | 29.59 | 28.93 |
| KRG92886 | Soybean | nucleus | 29.79 | 28.41 |
| AT3G05430.1 | Thale cress | nucleus | 27.21 | 28.39 |
| GSMUA_Achr8P06730_001 | Banana | nucleus | 28.1 | 27.83 |
| AT5G27650.1 | Thale cress | nucleus | 29.49 | 27.71 |
| Zm00001d024841_P001 | Maize | nucleus | 22.64 | 26.82 |
| GSMUA_Achr3P23960_001 | Banana | nucleus | 26.91 | 26.44 |
| VIT_14s0060g02400.t01 | Wine grape | nucleus | 32.47 | 26.14 |
| Os05t0149200-01 | Rice | plastid | 9.33 | 25.13 |
| Zm00001d010869_P001 | Maize | nucleus | 22.44 | 22.94 |
| OQU77406 | Sorghum | nucleus | 22.64 | 22.18 |
| Solyc01g067040.1.1 | Tomato | nucleus | 14.0 | 20.86 |
| TraesCS1A01G089100.1 | Wheat | plastid | 22.34 | 20.74 |
| HORVU1Hr1G020500.2 | Barley | nucleus, plastid | 22.34 | 20.66 |
| TraesCS1B01G116700.1 | Wheat | plastid | 21.95 | 20.48 |
| TraesCS1D01G097400.1 | Wheat | plastid | 20.46 | 19.77 |
| Solyc02g086750.1.1 | Tomato | nucleus | 12.02 | 14.49 |
| Solyc04g049950.1.1 | Tomato | nucleus | 6.26 | 13.91 |
| Solyc04g049930.2.1 | Tomato | nucleus | 7.05 | 8.79 |
| Solyc09g007340.2.1 | Tomato | cytosol | 12.31 | 5.85 |
| Solyc06g071490.1.1 | Tomato | nucleus | 4.67 | 4.14 |
Protein Annotations
| EnsemblPlants:Solyc01g099360.2.1 | EnsemblPlantsGene:Solyc01g099360.2 | Gene3D:2.30.30.140 | InterPro:IPR000313 | InterPro:PWWP_dom | PANTHER:PTHR10688 |
| PANTHER:PTHR10688:SF1 | PFAM:PF00855 | PFscan:PS50812 | SEG:seg | SMART:SM00293 | SUPFAM:SSF63748 |
| UniParc:UPI0002768D6B | UniProt:K4B0X3 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr1:+:89644679..89656363
Molecular Weight (calculated)
110633.0 Da
IEP (calculated)
9.910
GRAVY (calculated)
-0.756
Length
1007 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSNRFEANRS NDSVEETQVR VSSRNPSDDS EQARVSMDGK DSRVSNSQTE DSRVLESETE GNQTRVNEIK DEEGGSSVKS GRMKLEQKGK TALVSSKTDA
0101: RKGKLEPYVS EYDLMLSKFD EFAGNVKCWS VGYGFEMGDM VWGKVKSHPW WPGHIFSEAF ATPSVRRSKR EGHILVAFYG DSSYGWFDPD ELVHFEPTYA
0201: EKSMQTNVKN FIKAVEEGVD EVSRRSALGL VCYCRKTYRL RAVSINGFFA VDFSDLERNC TYSASQIKKA RESFKPKETR GYVNKLALKP RRKVHADLNL
0301: VKKKATALAY RKAVFEEDDP TYAEAFGVVY SKQAQEVAQP FRQPSSRAPL SGRLVHAETL GKVKGPAKSN KMKDQVEKDR YLFKRRDEPV NLKVHQVGPA
0401: QAGSSDQSAH LDSSSFAGKD VSPSAADASG STLIESFKQP SSQVANVEEL HVERQAEDGG TDVVRPSDKV KVRKRSGGEA SGGSSPSTER KKKKKKVVLG
0501: MKTESNHRDA PAAAVSSDNQ VMEKVARESI QVPSVSKEEL QMDIQQKGDP ADSSVPDRVV TDDKVGIRSD NVDIRQLLSD LHAISLDPLY GAQSRNINTI
0601: REVFLKFRSL VYRKSVESES STPISKLPVA APISDTGPSN NVKQTSNLKP QKNPARPHDP STKGGRKRGT SDRQEELAAK KKKKINDLRT LAAQRKPSSK
0701: TSEVKPGESK EIPAKKLVST PVKSSKPDSV KRDPAEKVPD PTMLIMKFPS NGALPSISEL KARFARFGAL DHSATRVFWK SSTCRLVYLY RNHAVQAFRF
0801: ASASTNLFGN TNVRCSIREV TAEAQDPETT KNDSGGTSAP KDGSADSRSS GKAGQLKSCL KKPPGEEGPT TDGGNGSNRG TPRVKFMLGA EDNINRDRGE
0901: QMNDIKNVNN TSSIADGSAS STSNINNYTS QLSMLSLPST AHYVNAPNDI HLALQAPLRN APNYNNQVSS ATEANFSQQM LALLTKCSDI VTDLTNLLGY
1001: FPYNGLQ
0101: RKGKLEPYVS EYDLMLSKFD EFAGNVKCWS VGYGFEMGDM VWGKVKSHPW WPGHIFSEAF ATPSVRRSKR EGHILVAFYG DSSYGWFDPD ELVHFEPTYA
0201: EKSMQTNVKN FIKAVEEGVD EVSRRSALGL VCYCRKTYRL RAVSINGFFA VDFSDLERNC TYSASQIKKA RESFKPKETR GYVNKLALKP RRKVHADLNL
0301: VKKKATALAY RKAVFEEDDP TYAEAFGVVY SKQAQEVAQP FRQPSSRAPL SGRLVHAETL GKVKGPAKSN KMKDQVEKDR YLFKRRDEPV NLKVHQVGPA
0401: QAGSSDQSAH LDSSSFAGKD VSPSAADASG STLIESFKQP SSQVANVEEL HVERQAEDGG TDVVRPSDKV KVRKRSGGEA SGGSSPSTER KKKKKKVVLG
0501: MKTESNHRDA PAAAVSSDNQ VMEKVARESI QVPSVSKEEL QMDIQQKGDP ADSSVPDRVV TDDKVGIRSD NVDIRQLLSD LHAISLDPLY GAQSRNINTI
0601: REVFLKFRSL VYRKSVESES STPISKLPVA APISDTGPSN NVKQTSNLKP QKNPARPHDP STKGGRKRGT SDRQEELAAK KKKKINDLRT LAAQRKPSSK
0701: TSEVKPGESK EIPAKKLVST PVKSSKPDSV KRDPAEKVPD PTMLIMKFPS NGALPSISEL KARFARFGAL DHSATRVFWK SSTCRLVYLY RNHAVQAFRF
0801: ASASTNLFGN TNVRCSIREV TAEAQDPETT KNDSGGTSAP KDGSADSRSS GKAGQLKSCL KKPPGEEGPT TDGGNGSNRG TPRVKFMLGA EDNINRDRGE
0901: QMNDIKNVNN TSSIADGSAS STSNINNYTS QLSMLSLPST AHYVNAPNDI HLALQAPLRN APNYNNQVSS ATEANFSQQM LALLTKCSDI VTDLTNLLGY
1001: FPYNGLQ
0001: MYKTKLIPVM NEDAVIVQQT DSIQDPKVTP DDTVVDSSGD VHEAIDDDVE ASSPMELDSA VTNDARVLES ERSEKDGVVG SEEEDEIKSE DVLIDKDDES
0101: SEVKEEEEEE DGSDDQSSEL GSEADEKELD LGLKEEKKGV SDYKSLLSEF DDYVASEKMG SGVSRALSYG FEVGDLVWGK VKSHPWWPGH IFNEAFASPS
0201: VRRMRRIDHV LVAFFGDSSY GWFDPAELIP FEPNLEEKSQ QTVSKHFVRA VEEAKDEASR RSALGLTCKC RNPYNFRPSN VEDYFAVDVP DYELQAVYSV
0301: DQIKNSRDKF LPAETISFVK QLALAPQECD PDSLKFMKKK AVVFAFRKSV FEEFDETYAQ AFGTKSPRSS VSTLEPHNRA PPRAPLSGPL VIAETLGDLK
0401: SSKKPTKVKV SKKKDKYLLK RRDEAGDKSV QFGEIEASSE ASHIQGIDGS LDGDFGLQRR APTLQTPMKD EKSGIVSMDF ASSNTAIPGK EFSASKPSLD
0501: EEKGLAEKSK ERMEERAAVL PEHGKSEAMA SLKPKEEAGT DLGSAGSSLQ PLLESHTSAS EGKSSTGSVI KKVKVAKRSS SEMSSENPPS EPKKKKKKKK
0601: EPDSDHPVKR KNLYSGEAGA KKLSQLGSAH LQTYMEADVP QLLSHLQDLS LDPFHGLSVA SFGTARKFFL RFRSLNYQKS LSVSSSDATV ENARDTKPSK
0701: PVKTVKRTED PSKAGKKRLS SDRQDEIPSA KKLKKTNQLK SMASEKKIIR EAKDSIKPIR EPSRVVQAKP ARGQTGKKTA PSVKVVEPTM LVMKFPPGTS
0801: LPSAALLKAR FGRFGLLDQS AIRVFWKSST CRVVFLYKAD AQTAFRYATG NNTLFGNVNV KYFLRDVDAP KAEPREPENT KEDDEPQSQW LDQAPPLHQP
0901: TLPPPNVNLK SCLKKPVDDP SSSSNNGNGN RAAVRVKFML GGEENSSKAN TEPPQVTMTL NRNSGPSSSS SSVPMEFVSK KFQNVVHHQQ LPPSTLPPIL
1001: PLPPQYTKPQ QLPIKPVDHV EPPMPPSRNF RGPIPAVSAG DISHQMLNLL SKCNEVVANV TGLLGYVPYH PL
0101: SEVKEEEEEE DGSDDQSSEL GSEADEKELD LGLKEEKKGV SDYKSLLSEF DDYVASEKMG SGVSRALSYG FEVGDLVWGK VKSHPWWPGH IFNEAFASPS
0201: VRRMRRIDHV LVAFFGDSSY GWFDPAELIP FEPNLEEKSQ QTVSKHFVRA VEEAKDEASR RSALGLTCKC RNPYNFRPSN VEDYFAVDVP DYELQAVYSV
0301: DQIKNSRDKF LPAETISFVK QLALAPQECD PDSLKFMKKK AVVFAFRKSV FEEFDETYAQ AFGTKSPRSS VSTLEPHNRA PPRAPLSGPL VIAETLGDLK
0401: SSKKPTKVKV SKKKDKYLLK RRDEAGDKSV QFGEIEASSE ASHIQGIDGS LDGDFGLQRR APTLQTPMKD EKSGIVSMDF ASSNTAIPGK EFSASKPSLD
0501: EEKGLAEKSK ERMEERAAVL PEHGKSEAMA SLKPKEEAGT DLGSAGSSLQ PLLESHTSAS EGKSSTGSVI KKVKVAKRSS SEMSSENPPS EPKKKKKKKK
0601: EPDSDHPVKR KNLYSGEAGA KKLSQLGSAH LQTYMEADVP QLLSHLQDLS LDPFHGLSVA SFGTARKFFL RFRSLNYQKS LSVSSSDATV ENARDTKPSK
0701: PVKTVKRTED PSKAGKKRLS SDRQDEIPSA KKLKKTNQLK SMASEKKIIR EAKDSIKPIR EPSRVVQAKP ARGQTGKKTA PSVKVVEPTM LVMKFPPGTS
0801: LPSAALLKAR FGRFGLLDQS AIRVFWKSST CRVVFLYKAD AQTAFRYATG NNTLFGNVNV KYFLRDVDAP KAEPREPENT KEDDEPQSQW LDQAPPLHQP
0901: TLPPPNVNLK SCLKKPVDDP SSSSNNGNGN RAAVRVKFML GGEENSSKAN TEPPQVTMTL NRNSGPSSSS SSVPMEFVSK KFQNVVHHQQ LPPSTLPPIL
1001: PLPPQYTKPQ QLPIKPVDHV EPPMPPSRNF RGPIPAVSAG DISHQMLNLL SKCNEVVANV TGLLGYVPYH PL
Arabidopsis Description
Tudor/PWWP/MBT superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K4D6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.