Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX99976 | Canola | nucleus | 42.35 | 48.5 |
| Bra036620.1-P | Field mustard | nucleus | 44.68 | 46.5 |
| CDY19729 | Canola | nucleus | 43.47 | 45.42 |
| AT3G05430.1 | Thale cress | nucleus | 32.74 | 36.37 |
| PGSC0003DMT400063505 | Potato | nucleus | 12.5 | 35.64 |
| KRH33902 | Soybean | nucleus | 32.46 | 33.3 |
| KRG92886 | Soybean | nucleus | 31.9 | 32.39 |
| KRG96822 | Soybean | nucleus | 30.69 | 30.6 |
| GSMUA_Achr8P06730_001 | Banana | nucleus | 28.54 | 30.09 |
| Solyc01g099360.2.1 | Tomato | nucleus | 27.71 | 29.49 |
| Zm00001d024841_P001 | Maize | nucleus | 22.2 | 28.0 |
| GSMUA_Achr3P23960_001 | Banana | nucleus | 26.31 | 27.51 |
| Os05t0149200-01 | Rice | plastid | 9.42 | 27.01 |
| VIT_14s0060g02400.t01 | Wine grape | nucleus | 31.25 | 26.78 |
| OQU77406 | Sorghum | nucleus | 22.85 | 23.83 |
| Zm00001d010869_P001 | Maize | nucleus | 21.55 | 23.45 |
| HORVU1Hr1G020500.2 | Barley | nucleus, plastid | 21.83 | 21.49 |
| TraesCS1B01G116700.1 | Wheat | plastid | 21.46 | 21.32 |
| TraesCS1A01G089100.1 | Wheat | plastid | 21.46 | 21.2 |
| AT5G02950.2 | Thale cress | nucleus | 11.66 | 19.78 |
| TraesCS1D01G097400.1 | Wheat | plastid | 19.22 | 19.77 |
| AT3G27860.1 | Thale cress | nucleus | 10.35 | 17.02 |
| AT3G09670.1 | Thale cress | nucleus | 9.61 | 14.19 |
| AT5G40340.1 | Thale cress | nucleus | 12.13 | 12.9 |
| AT3G48187.1 | Thale cress | nucleus | 5.22 | 6.62 |
Protein Annotations
| Gene3D:2.30.30.140 | MapMan:35.2 | EntrezGene:832827 | ProteinID:AED93711.1 | ArrayExpress:AT5G27650 | EnsemblPlantsGene:AT5G27650 |
| RefSeq:AT5G27650 | TAIR:AT5G27650 | RefSeq:AT5G27650-TAIR-G | EnsemblPlants:AT5G27650.1 | TAIR:AT5G27650.1 | Unigene:At.30794 |
| ncoils:Coil | UniProt:F4K4D6 | GO:GO:0008150 | InterPro:IPR000313 | RefSeq:NP_198117.2 | PFAM:PF00855 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50812 |
| PANTHER:PTHR10688 | PANTHER:PTHR10688:SF1 | InterPro:PWWP_dom | SMART:SM00293 | SUPFAM:SSF63748 | UniParc:UPI0000196F1D |
| SEG:seg | : | : | : | : | : |
Description
Tudor/PWWP/MBT superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K4D6]
Coordinates
chr5:+:9785407..9789354
Molecular Weight (calculated)
118102.0 Da
IEP (calculated)
6.750
GRAVY (calculated)
-0.693
Length
1072 amino acids
Sequence
(BLAST)
(BLAST)
0001: MYKTKLIPVM NEDAVIVQQT DSIQDPKVTP DDTVVDSSGD VHEAIDDDVE ASSPMELDSA VTNDARVLES ERSEKDGVVG SEEEDEIKSE DVLIDKDDES
0101: SEVKEEEEEE DGSDDQSSEL GSEADEKELD LGLKEEKKGV SDYKSLLSEF DDYVASEKMG SGVSRALSYG FEVGDLVWGK VKSHPWWPGH IFNEAFASPS
0201: VRRMRRIDHV LVAFFGDSSY GWFDPAELIP FEPNLEEKSQ QTVSKHFVRA VEEAKDEASR RSALGLTCKC RNPYNFRPSN VEDYFAVDVP DYELQAVYSV
0301: DQIKNSRDKF LPAETISFVK QLALAPQECD PDSLKFMKKK AVVFAFRKSV FEEFDETYAQ AFGTKSPRSS VSTLEPHNRA PPRAPLSGPL VIAETLGDLK
0401: SSKKPTKVKV SKKKDKYLLK RRDEAGDKSV QFGEIEASSE ASHIQGIDGS LDGDFGLQRR APTLQTPMKD EKSGIVSMDF ASSNTAIPGK EFSASKPSLD
0501: EEKGLAEKSK ERMEERAAVL PEHGKSEAMA SLKPKEEAGT DLGSAGSSLQ PLLESHTSAS EGKSSTGSVI KKVKVAKRSS SEMSSENPPS EPKKKKKKKK
0601: EPDSDHPVKR KNLYSGEAGA KKLSQLGSAH LQTYMEADVP QLLSHLQDLS LDPFHGLSVA SFGTARKFFL RFRSLNYQKS LSVSSSDATV ENARDTKPSK
0701: PVKTVKRTED PSKAGKKRLS SDRQDEIPSA KKLKKTNQLK SMASEKKIIR EAKDSIKPIR EPSRVVQAKP ARGQTGKKTA PSVKVVEPTM LVMKFPPGTS
0801: LPSAALLKAR FGRFGLLDQS AIRVFWKSST CRVVFLYKAD AQTAFRYATG NNTLFGNVNV KYFLRDVDAP KAEPREPENT KEDDEPQSQW LDQAPPLHQP
0901: TLPPPNVNLK SCLKKPVDDP SSSSNNGNGN RAAVRVKFML GGEENSSKAN TEPPQVTMTL NRNSGPSSSS SSVPMEFVSK KFQNVVHHQQ LPPSTLPPIL
1001: PLPPQYTKPQ QLPIKPVDHV EPPMPPSRNF RGPIPAVSAG DISHQMLNLL SKCNEVVANV TGLLGYVPYH PL
0101: SEVKEEEEEE DGSDDQSSEL GSEADEKELD LGLKEEKKGV SDYKSLLSEF DDYVASEKMG SGVSRALSYG FEVGDLVWGK VKSHPWWPGH IFNEAFASPS
0201: VRRMRRIDHV LVAFFGDSSY GWFDPAELIP FEPNLEEKSQ QTVSKHFVRA VEEAKDEASR RSALGLTCKC RNPYNFRPSN VEDYFAVDVP DYELQAVYSV
0301: DQIKNSRDKF LPAETISFVK QLALAPQECD PDSLKFMKKK AVVFAFRKSV FEEFDETYAQ AFGTKSPRSS VSTLEPHNRA PPRAPLSGPL VIAETLGDLK
0401: SSKKPTKVKV SKKKDKYLLK RRDEAGDKSV QFGEIEASSE ASHIQGIDGS LDGDFGLQRR APTLQTPMKD EKSGIVSMDF ASSNTAIPGK EFSASKPSLD
0501: EEKGLAEKSK ERMEERAAVL PEHGKSEAMA SLKPKEEAGT DLGSAGSSLQ PLLESHTSAS EGKSSTGSVI KKVKVAKRSS SEMSSENPPS EPKKKKKKKK
0601: EPDSDHPVKR KNLYSGEAGA KKLSQLGSAH LQTYMEADVP QLLSHLQDLS LDPFHGLSVA SFGTARKFFL RFRSLNYQKS LSVSSSDATV ENARDTKPSK
0701: PVKTVKRTED PSKAGKKRLS SDRQDEIPSA KKLKKTNQLK SMASEKKIIR EAKDSIKPIR EPSRVVQAKP ARGQTGKKTA PSVKVVEPTM LVMKFPPGTS
0801: LPSAALLKAR FGRFGLLDQS AIRVFWKSST CRVVFLYKAD AQTAFRYATG NNTLFGNVNV KYFLRDVDAP KAEPREPENT KEDDEPQSQW LDQAPPLHQP
0901: TLPPPNVNLK SCLKKPVDDP SSSSNNGNGN RAAVRVKFML GGEENSSKAN TEPPQVTMTL NRNSGPSSSS SSVPMEFVSK KFQNVVHHQQ LPPSTLPPIL
1001: PLPPQYTKPQ QLPIKPVDHV EPPMPPSRNF RGPIPAVSAG DISHQMLNLL SKCNEVVANV TGLLGYVPYH PL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.