Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX99976 | Canola | nucleus | 36.99 | 38.14 |
| CDY19729 | Canola | nucleus | 37.2 | 34.99 |
| Bra036620.1-P | Field mustard | nucleus | 36.99 | 34.66 |
| PGSC0003DMT400063505 | Potato | nucleus | 13.16 | 33.78 |
| AT5G27650.1 | Thale cress | nucleus | 36.37 | 32.74 |
| KRG96822 | Soybean | nucleus | 30.47 | 27.35 |
| Solyc01g099360.2.1 | Tomato | nucleus | 28.39 | 27.21 |
| KRH33902 | Soybean | nucleus | 29.02 | 26.79 |
| KRG92886 | Soybean | nucleus | 29.22 | 26.7 |
| GSMUA_Achr8P06730_001 | Banana | nucleus | 26.32 | 24.98 |
| Os05t0149200-01 | Rice | plastid | 9.64 | 24.87 |
| Zm00001d024841_P001 | Maize | nucleus | 21.14 | 24.0 |
| GSMUA_Achr3P23960_001 | Banana | nucleus | 24.97 | 23.51 |
| VIT_14s0060g02400.t01 | Wine grape | nucleus | 29.74 | 22.94 |
| Zm00001d010869_P001 | Maize | nucleus | 20.41 | 20.0 |
| OQU77406 | Sorghum | nucleus | 20.93 | 19.65 |
| TraesCS1B01G116700.1 | Wheat | plastid | 20.31 | 18.16 |
| TraesCS1A01G089100.1 | Wheat | plastid | 20.41 | 18.16 |
| HORVU1Hr1G020500.2 | Barley | nucleus, plastid | 20.41 | 18.09 |
| AT5G02950.2 | Thale cress | nucleus | 11.5 | 17.56 |
| TraesCS1D01G097400.1 | Wheat | plastid | 18.13 | 16.79 |
| AT3G27860.1 | Thale cress | nucleus | 11.19 | 16.56 |
| AT3G09670.1 | Thale cress | nucleus | 10.47 | 13.91 |
| AT5G40340.1 | Thale cress | nucleus | 13.26 | 12.7 |
| AT3G48187.1 | Thale cress | nucleus | 6.11 | 6.97 |
Protein Annotations
| Gene3D:2.30.30.140 | MapMan:35.2 | EntrezGene:819708 | ProteinID:AAF64539.1 | EMBL:AB493602 | ProteinID:AEE74240.1 |
| ArrayExpress:AT3G05430 | EnsemblPlantsGene:AT3G05430 | RefSeq:AT3G05430 | TAIR:AT3G05430 | RefSeq:AT3G05430-TAIR-G | EnsemblPlants:AT3G05430.1 |
| TAIR:AT3G05430.1 | Unigene:At.40672 | GO:GO:0008150 | InterPro:IPR000313 | RefSeq:NP_187194.1 | PFAM:PF00855 |
| PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000293 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 |
| PO:PO:0020094 | PO:PO:0020100 | PO:PO:0025022 | PFscan:PS50812 | PANTHER:PTHR10688 | PANTHER:PTHR10688:SF1 |
| InterPro:PWWP_dom | UniProt:Q9MA56 | SMART:SM00293 | SUPFAM:SSF63748 | UniParc:UPI00000A56A7 | SEG:seg |
Description
F22F7.12 protein [Source:UniProtKB/TrEMBL;Acc:Q9MA56]
Coordinates
chr3:+:1567624..1571218
Molecular Weight (calculated)
107906.0 Da
IEP (calculated)
10.044
GRAVY (calculated)
-0.645
Length
965 amino acids
Sequence
(BLAST)
(BLAST)
001: MNSAEVNVNP RVFGDSFVTF SGNGSGKFEM IDQAEAFLME LDSVAADTGS DGNGNVDLGS RVSNSETEPR FCEMKREIRD SDHRFYELCN ESGEKKMEKR
101: RVPDYKSFLS EFDDYVAREK MGSRNSKALS YGFEVGDMVW GKVKSHPWWP GQIFNEAFAS PSVRRVKKMG YVLVAFFGDN SYGWFDPAEL IPFEPHVKEK
201: SQQTSSDHFA KAVEEAMNEV GRRSALGLTC KCRNQYNFRP INAQGYFAVD VPDYEVQAIY SSKQIQKARD SFSSVQTLAF VKRCALAPQE CDTDSLKSFQ
301: KKVAVCAFRR AVFEEFDETY EQAFRARSVY CLMKTHEPLN RAPLRVPLSG SLVSAETLGN PKSYTKAMNV KDSTKQDKYL PKRREEAGDM TVQFGQVQES
401: SQFQGINGSS AWDRLLQRRT PCLQTPRKHE QTGLVSMNFT SSSGNIPGKK SSVSKLSRDD DKGLAQESDV RMGEKATLFP DQEKFEPMKS LKQDETGTNS
501: RSNKSSLKLF SGGKFSAGVG IKKGNVVKRS SGEMKSENCP PEPKKKKKEY VSELNRDTPD KRKALSSGEA WAKKSSQVDS AKRRSNMLIV KLDGLQLLSN
601: LLALSLDPLF GSSDRSSFRV IRQFFFHFRS HVYQKSLATS PSATKLSKSA KTLCRANEQS KAGRNRISSD SQQDVPSTKK LKKTIQFKPL ASDKKTNQDA
701: TKRSSLAPLN PVRDQCRVPI NAKPAIVQQE KKTGPSAMVV EPTMLVMMFP PGESLPSIDL LKARFGRFGQ LDQSAIRVSW KSSICRVGFL YKLDAQTALR
801: YVSGSKSLFG NVNVTYFLRD MKASSASGDH ELKKAKRPKT DKPITKPLNQ LLEQAPPVHQ PNIQLKSCLK KPGNNRNGNH RTVRVKFMLG EKETESPFSV
901: SILPLSSQDS EPKPVNNQVD HVEPPLDPSQ LKVDISLQMM ELLTRCNDAV ANVTGLLGYV PYHSL
101: RVPDYKSFLS EFDDYVAREK MGSRNSKALS YGFEVGDMVW GKVKSHPWWP GQIFNEAFAS PSVRRVKKMG YVLVAFFGDN SYGWFDPAEL IPFEPHVKEK
201: SQQTSSDHFA KAVEEAMNEV GRRSALGLTC KCRNQYNFRP INAQGYFAVD VPDYEVQAIY SSKQIQKARD SFSSVQTLAF VKRCALAPQE CDTDSLKSFQ
301: KKVAVCAFRR AVFEEFDETY EQAFRARSVY CLMKTHEPLN RAPLRVPLSG SLVSAETLGN PKSYTKAMNV KDSTKQDKYL PKRREEAGDM TVQFGQVQES
401: SQFQGINGSS AWDRLLQRRT PCLQTPRKHE QTGLVSMNFT SSSGNIPGKK SSVSKLSRDD DKGLAQESDV RMGEKATLFP DQEKFEPMKS LKQDETGTNS
501: RSNKSSLKLF SGGKFSAGVG IKKGNVVKRS SGEMKSENCP PEPKKKKKEY VSELNRDTPD KRKALSSGEA WAKKSSQVDS AKRRSNMLIV KLDGLQLLSN
601: LLALSLDPLF GSSDRSSFRV IRQFFFHFRS HVYQKSLATS PSATKLSKSA KTLCRANEQS KAGRNRISSD SQQDVPSTKK LKKTIQFKPL ASDKKTNQDA
701: TKRSSLAPLN PVRDQCRVPI NAKPAIVQQE KKTGPSAMVV EPTMLVMMFP PGESLPSIDL LKARFGRFGQ LDQSAIRVSW KSSICRVGFL YKLDAQTALR
801: YVSGSKSLFG NVNVTYFLRD MKASSASGDH ELKKAKRPKT DKPITKPLNQ LLEQAPPVHQ PNIQLKSCLK KPGNNRNGNH RTVRVKFMLG EKETESPFSV
901: SILPLSSQDS EPKPVNNQVD HVEPPLDPSQ LKVDISLQMM ELLTRCNDAV ANVTGLLGYV PYHSL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.