Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra025306.1-P | Field mustard | nucleus | 27.3 | 33.65 |
| CDX86465 | Canola | nucleus | 27.3 | 33.65 |
| CDY44440 | Canola | plastid | 26.38 | 29.45 |
| AT5G40340.1 | Thale cress | nucleus | 33.74 | 21.83 |
| KRH56588 | Soybean | nucleus | 23.16 | 21.15 |
| PGSC0003DMT400001285 | Potato | nucleus | 23.93 | 18.73 |
| Solyc02g086750.1.1 | Tomato | nucleus | 23.77 | 18.56 |
| VIT_14s0066g01120.t01 | Wine grape | nucleus | 25.46 | 17.06 |
| KRH07190 | Soybean | nucleus | 24.23 | 16.86 |
| KRG94143 | Soybean | nucleus | 23.31 | 16.4 |
| KRG93266 | Soybean | nucleus | 23.31 | 13.86 |
| AT5G02950.2 | Thale cress | nucleus | 13.34 | 13.77 |
| AT3G09670.1 | Thale cress | nucleus | 14.57 | 13.09 |
| AT3G05430.1 | Thale cress | nucleus | 16.56 | 11.19 |
| AT5G27650.1 | Thale cress | nucleus | 17.02 | 10.35 |
| AT3G48187.1 | Thale cress | nucleus | 7.67 | 5.91 |
Protein Annotations
| Gene3D:2.30.30.140 | MapMan:35.2 | EntrezGene:822406 | ProteinID:AEE77373.1 | ProteinID:ANM63487.1 | ArrayExpress:AT3G27860 |
| EnsemblPlantsGene:AT3G27860 | RefSeq:AT3G27860 | TAIR:AT3G27860 | RefSeq:AT3G27860-TAIR-G | EnsemblPlants:AT3G27860.1 | TAIR:AT3G27860.1 |
| Unigene:At.51220 | ProteinID:BAB02532.1 | ncoils:Coil | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0016020 |
| InterPro:IPR000313 | RefSeq:NP_001319658.1 | RefSeq:NP_189424.1 | PFAM:PF00855 | PO:PO:0009025 | PFscan:PS50812 |
| PANTHER:PTHR10688 | PANTHER:PTHR10688:SF3 | InterPro:PWWP_dom | UniProt:Q9LK91 | SUPFAM:SSF63748 | UniParc:UPI000009CC5E |
| SEG:seg | : | : | : | : | : |
Description
Tudor/PWWP/MBT superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LK91]
Coordinates
chr3:+:10325834..10328323
Molecular Weight (calculated)
73670.2 Da
IEP (calculated)
5.643
GRAVY (calculated)
-0.644
Length
652 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNILPTGSR VSENEGSDDN KLKEHDVKME NVKEDSEQIG DNVRSGVSSL RDNFEELENG FHVGDFVWGE EANSQQWWPG QIYDSLDASD LALKTMQKGK
101: LLVAYFGDGS FFGWCNPLEL KPFLENFKEF SKMSDSRRFL LAVEDAVREI GEHVEKFLVC DDAALVSSVA LNLGIKDGVV VPDVRRKIIS SLVLENPGVV
201: LEDVKRLAMT VRFDDLLEIE VLRRKISAFY RCKGRFDLAK FDEHRYIIGL EDKEHESCQR LLRKCSGFAS KKRKCGDVAT TGSTTLRKKR LSEVSKIETA
301: EKEISNGKSL SSRKRKSKRG LDENDDDGIE KREESNDSNH LEESEKKDDL ATPLASICKR LNVDVSSCVK RCNGNGEAIL QTGKRERKKS KYLSPEYMTD
401: FSCRARKIKI ESAESSQIQV AVRMTTPNTA IDVVKLGATP EEMLALIRAA ALNAQYPKDY NSTSCDMVRE FVSNYRSFNN KRNLSDVEKQ PEVKQEIVDE
501: KEKTRNEPGV ELYIKTGFGS TLPSKDDLIK TYEKFGALDK ERSYMFNNNS CSCVAFVNAS DGEEAFNRSL EKCPFATTST VTFKLEYPSS ASSEKKEAET
601: RKGVTEIECL KEKLEGIRAL LDQSEGKITE ELKMKLEDES RNLLDKVRKM II
101: LLVAYFGDGS FFGWCNPLEL KPFLENFKEF SKMSDSRRFL LAVEDAVREI GEHVEKFLVC DDAALVSSVA LNLGIKDGVV VPDVRRKIIS SLVLENPGVV
201: LEDVKRLAMT VRFDDLLEIE VLRRKISAFY RCKGRFDLAK FDEHRYIIGL EDKEHESCQR LLRKCSGFAS KKRKCGDVAT TGSTTLRKKR LSEVSKIETA
301: EKEISNGKSL SSRKRKSKRG LDENDDDGIE KREESNDSNH LEESEKKDDL ATPLASICKR LNVDVSSCVK RCNGNGEAIL QTGKRERKKS KYLSPEYMTD
401: FSCRARKIKI ESAESSQIQV AVRMTTPNTA IDVVKLGATP EEMLALIRAA ALNAQYPKDY NSTSCDMVRE FVSNYRSFNN KRNLSDVEKQ PEVKQEIVDE
501: KEKTRNEPGV ELYIKTGFGS TLPSKDDLIK TYEKFGALDK ERSYMFNNNS CSCVAFVNAS DGEEAFNRSL EKCPFATTST VTFKLEYPSS ASSEKKEAET
601: RKGVTEIECL KEKLEGIRAL LDQSEGKITE ELKMKLEDES RNLLDKVRKM II
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.