Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400001285 | Potato | nucleus | 81.56 | 81.75 |
| CDX67453 | Canola | cytosol, nucleus, plastid | 10.9 | 32.27 |
| CDY11682 | Canola | cytosol, nucleus, plastid | 9.22 | 30.2 |
| KRH56588 | Soybean | nucleus | 21.8 | 25.49 |
| VIT_14s0066g01120.t01 | Wine grape | nucleus | 29.58 | 25.39 |
| KRH07190 | Soybean | nucleus | 26.83 | 23.91 |
| AT3G27860.1 | Thale cress | nucleus | 18.56 | 23.77 |
| CDX86465 | Canola | nucleus | 14.85 | 23.44 |
| Bra025306.1-P | Field mustard | nucleus | 14.85 | 23.44 |
| KRG94143 | Soybean | nucleus | 25.87 | 23.3 |
| CDY44440 | Canola | plastid | 14.61 | 20.89 |
| Bra028455.1-P | Field mustard | nucleus | 21.44 | 20.14 |
| AT5G40340.1 | Thale cress | nucleus | 23.59 | 19.54 |
| KRG93266 | Soybean | nucleus | 23.11 | 17.59 |
| Solyc04g049950.1.1 | Tomato | nucleus | 9.34 | 17.22 |
| Solyc01g067040.1.1 | Tomato | nucleus | 10.9 | 13.46 |
| Solyc01g099360.2.1 | Tomato | nucleus | 14.49 | 12.02 |
| Solyc04g049930.2.1 | Tomato | nucleus | 8.62 | 8.91 |
| Solyc06g071490.1.1 | Tomato | nucleus | 8.74 | 6.43 |
| Solyc09g007340.2.1 | Tomato | cytosol | 16.05 | 6.32 |
Protein Annotations
| EnsemblPlants:Solyc02g086750.1.1 | EnsemblPlantsGene:Solyc02g086750.1 | Gene3D:2.30.30.140 | InterPro:IPR000313 | InterPro:PWWP_dom | ncoils:Coil |
| PANTHER:PTHR10688 | PANTHER:PTHR10688:SF3 | PFAM:PF00855 | PFscan:PS50812 | SEG:seg | SMART:SM00293 |
| SUPFAM:SSF63748 | UniParc:UPI0002767B53 | UniProt:K4BBI2 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr2:+:49367024..49369531
Molecular Weight (calculated)
90829.7 Da
IEP (calculated)
4.938
GRAVY (calculated)
-0.649
Length
835 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSEEKTEKS ENLDGLSAEA LDSETLMADS VTGLSDEVPR VSDDNGNVDT GAISEPVVAT EETLEVGSDA GGDVVEVHGS LDNVSGGELA SEGAEADQGS
101: GHLVEEMNGE ENVAGGSDDE MIDAVDGETA EDNSGDDTTS VKHVYAVGDF VWGKIKSHPW WPGRVYDAST ASDFAMKYNQ TGRLLVAYFG DGSFSWCPPS
201: QLVPFVDNFE KMSKQSTSKS FLYAVEKTLD EIGVLVEFQM TCQCVSEESL TGLSWPLAVN AGIKKGVQVP VSETVSLLLS QFEPAERLKG LKRNALTNSH
301: SNILEFAVLN SWLSAFYRAK YGHPLASYCE PLLVEGLEDK KEDQVIDAND FSIPIEVPIQ GPSEEIPNSG SSKFPMTACD KIYQKRKQKS VAELMGENAK
401: PKGKKTTEDD STPSSVETSE KKRKKSGEKA KGQTGSSMSV DEKIGKRVNK KSGDSDLVKT KKLSVSIPES DEVGNQQDNA GPLSRERKKS KYLSPPYTSP
501: KWNAGKSSFK RELAIESQKF SDNSKIGERM TKAARLLLSS PDSNGKEAFK DDVDKSSGIN KRSSRTFDTV AINSSVDEVL SEVQSTALNP LLLRNGSLEK
601: ARGFISTFRN SLYYDGSNYK QYHQMETGKK RKSAGSGNLI SQSDTESPDS IPSKKRKTNY AKSEVTKLKK DYGPSSQGKE DEDDGREASS VILLVAFLTG
701: FSLPPEDEII RIYNKFGELN EEETEVLRDS NSVRIVYRHG ADAAQAFKES VRQSPFGAAN VNFTLSYSSK SESPLSSLKA RKGKSQVQLI KQKLKGMASI
801: LDKCKGKITS AEKSELENEI KGLVEKVSAV TSTNP
101: GHLVEEMNGE ENVAGGSDDE MIDAVDGETA EDNSGDDTTS VKHVYAVGDF VWGKIKSHPW WPGRVYDAST ASDFAMKYNQ TGRLLVAYFG DGSFSWCPPS
201: QLVPFVDNFE KMSKQSTSKS FLYAVEKTLD EIGVLVEFQM TCQCVSEESL TGLSWPLAVN AGIKKGVQVP VSETVSLLLS QFEPAERLKG LKRNALTNSH
301: SNILEFAVLN SWLSAFYRAK YGHPLASYCE PLLVEGLEDK KEDQVIDAND FSIPIEVPIQ GPSEEIPNSG SSKFPMTACD KIYQKRKQKS VAELMGENAK
401: PKGKKTTEDD STPSSVETSE KKRKKSGEKA KGQTGSSMSV DEKIGKRVNK KSGDSDLVKT KKLSVSIPES DEVGNQQDNA GPLSRERKKS KYLSPPYTSP
501: KWNAGKSSFK RELAIESQKF SDNSKIGERM TKAARLLLSS PDSNGKEAFK DDVDKSSGIN KRSSRTFDTV AINSSVDEVL SEVQSTALNP LLLRNGSLEK
601: ARGFISTFRN SLYYDGSNYK QYHQMETGKK RKSAGSGNLI SQSDTESPDS IPSKKRKTNY AKSEVTKLKK DYGPSSQGKE DEDDGREASS VILLVAFLTG
701: FSLPPEDEII RIYNKFGELN EEETEVLRDS NSVRIVYRHG ADAAQAFKES VRQSPFGAAN VNFTLSYSSK SESPLSSLKA RKGKSQVQLI KQKLKGMASI
801: LDKCKGKITS AEKSELENEI KGLVEKVSAV TSTNP
001: MGNILPTGSR VSENEGSDDN KLKEHDVKME NVKEDSEQIG DNVRSGVSSL RDNFEELENG FHVGDFVWGE EANSQQWWPG QIYDSLDASD LALKTMQKGK
101: LLVAYFGDGS FFGWCNPLEL KPFLENFKEF SKMSDSRRFL LAVEDAVREI GEHVEKFLVC DDAALVSSVA LNLGIKDGVV VPDVRRKIIS SLVLENPGVV
201: LEDVKRLAMT VRFDDLLEIE VLRRKISAFY RCKGRFDLAK FDEHRYIIGL EDKEHESCQR LLRKCSGFAS KKRKCGDVAT TGSTTLRKKR LSEVSKIETA
301: EKEISNGKSL SSRKRKSKRG LDENDDDGIE KREESNDSNH LEESEKKDDL ATPLASICKR LNVDVSSCVK RCNGNGEAIL QTGKRERKKS KYLSPEYMTD
401: FSCRARKIKI ESAESSQIQV AVRMTTPNTA IDVVKLGATP EEMLALIRAA ALNAQYPKDY NSTSCDMVRE FVSNYRSFNN KRNLSDVEKQ PEVKQEIVDE
501: KEKTRNEPGV ELYIKTGFGS TLPSKDDLIK TYEKFGALDK ERSYMFNNNS CSCVAFVNAS DGEEAFNRSL EKCPFATTST VTFKLEYPSS ASSEKKEAET
601: RKGVTEIECL KEKLEGIRAL LDQSEGKITE ELKMKLEDES RNLLDKVRKM II
101: LLVAYFGDGS FFGWCNPLEL KPFLENFKEF SKMSDSRRFL LAVEDAVREI GEHVEKFLVC DDAALVSSVA LNLGIKDGVV VPDVRRKIIS SLVLENPGVV
201: LEDVKRLAMT VRFDDLLEIE VLRRKISAFY RCKGRFDLAK FDEHRYIIGL EDKEHESCQR LLRKCSGFAS KKRKCGDVAT TGSTTLRKKR LSEVSKIETA
301: EKEISNGKSL SSRKRKSKRG LDENDDDGIE KREESNDSNH LEESEKKDDL ATPLASICKR LNVDVSSCVK RCNGNGEAIL QTGKRERKKS KYLSPEYMTD
401: FSCRARKIKI ESAESSQIQV AVRMTTPNTA IDVVKLGATP EEMLALIRAA ALNAQYPKDY NSTSCDMVRE FVSNYRSFNN KRNLSDVEKQ PEVKQEIVDE
501: KEKTRNEPGV ELYIKTGFGS TLPSKDDLIK TYEKFGALDK ERSYMFNNNS CSCVAFVNAS DGEEAFNRSL EKCPFATTST VTFKLEYPSS ASSEKKEAET
601: RKGVTEIECL KEKLEGIRAL LDQSEGKITE ELKMKLEDES RNLLDKVRKM II
Arabidopsis Description
Tudor/PWWP/MBT superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LK91]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.