Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400069444 | Potato | nucleus | 87.75 | 86.99 |
| Bra018079.1-P | Field mustard | nucleus | 13.92 | 17.69 |
| CDY39560 | Canola | nucleus | 13.13 | 17.68 |
| CDY48152 | Canola | nucleus | 13.22 | 16.85 |
| AT3G48187.1 | Thale cress | nucleus | 12.16 | 16.31 |
| KRH17636 | Soybean | nucleus | 8.11 | 12.33 |
| Solyc04g049950.1.1 | Tomato | nucleus | 4.76 | 11.92 |
| KRG90051 | Soybean | nucleus | 7.31 | 10.78 |
| Solyc02g086750.1.1 | Tomato | nucleus | 6.43 | 8.74 |
| Solyc01g067040.1.1 | Tomato | nucleus | 3.96 | 6.66 |
| VIT_17s0000g08510.t01 | Wine grape | nucleus | 6.17 | 5.66 |
| Solyc04g049930.2.1 | Tomato | nucleus | 3.52 | 4.95 |
| Solyc01g099360.2.1 | Tomato | nucleus | 4.14 | 4.67 |
| Solyc09g007340.2.1 | Tomato | cytosol | 5.11 | 2.74 |
Protein Annotations
| EnsemblPlants:Solyc06g071490.1.1 | EnsemblPlantsGene:Solyc06g071490.1 | Gene3D:2.30.30.140 | InterPro:IPR000313 | InterPro:PWWP_dom | PANTHER:PTHR10688 |
| PANTHER:PTHR10688:SF3 | PFAM:PF00855 | PFscan:PS50812 | SEG:seg | SUPFAM:SSF63748 | UniParc:UPI0002767104 |
| UniProt:K4C8M1 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr6:-:43997428..44000835
Molecular Weight (calculated)
122698.0 Da
IEP (calculated)
4.859
GRAVY (calculated)
-0.557
Length
1135 amino acids
Sequence
(BLAST)
(BLAST)
0001: METQKISETL VEGSVDYKPI LSQTPDGKTL EKVSVVSSLS ESGAVSELVT VTEVPSGVGN ANVHKNIANV VDGTELELMG VGFEQKIVDG YDNIDSEVKS
0101: EERLVDGYDH IDSEGVKSEE KLANVDNNNG LEGVDTEQKL VDGQGTVESE NKLANVDDYN DLEGVEIENK FGDVDDTIDL EALGLANEDV TLDGLMEAGT
0201: LKHETQESGA EFNESLDNRV EKIGVADAVE DMDRSKVHIN DSPTKIEVSG DGISLTVDVF GPDCTFYMET DNPMGVNGNE AEGDVSDNQE HTFAVGDLVW
0301: VKMKTDLWWP GMICDPQTSK DAGKCNQVDG FFVKHFGSTS SVWCRPFQLK PFIEYFELMS RQNKSRSFYG AIEKALGEYG RRVKQKMTCS CFSKENQVAA
0401: QNVPSKEDEN GGSAFSASQF EPSKFLKFIK SRALGLLSPS DIEFTVAENC LSAFYSSIGH KQLPLYKLRP TSNQISASKD EDLDKLSSGD SVLKSCRSGS
0501: DDRKMTEMEL SGSLESPRGT RSMISRSQIS NENAGGKSEK GFESRERKKS KYLSYPYVNS WASRKNSLGQ GEDETEDCEE VTPGGVKRSS NPSMVSTPIG
0601: NSSNKTSLRK SRKSVNDNDI CNNADFSAVS SAEMLQGLHQ TARDCFFPIQ STRSIPIRDF YLSFRAFRDP EVQIDEYKEA TLGCPVTFQS DNSLASGGYD
0701: LQVEGQPPPN VLPKKRGGKK SDGINATGPK FSSKTNLPRM TADGTSMNGS PLIDSVQTGP DTLKKGVVHR QRKKAAIAAV VHNEIGILGG LPDLNGNNAG
0801: LSVENMQVIG PAPTQGKLEP KRRRRKKEEL VSENLPDLSK GNTQFIPMLK SVEVTGSLPL EGGPQPDNML GVQGASSLPN AELFAGQPNA NGIHAAGSSL
0901: PNISQITGLV SSAKGEGKKR KRKEKALIIQ NTSSALPDLN GQVTDPNLKG KEVTEMSSVS GQAKPKQKRR RATKSAAIGI PNPNGDHNTL LLYFTPGSPV
1001: PSKEYICATF ASFGPLEESK TLYLNDSTAQ VVFAKDSDAM EALQSLQSRN PFGPSLVSYR LRHVSTSQPA ALLSGAVPSN GEGPDLVVIK QNLESMTTML
1101: EKAGDNISPE IKAKLESEVK GFLEKVSTMV GSSSS
0101: EERLVDGYDH IDSEGVKSEE KLANVDNNNG LEGVDTEQKL VDGQGTVESE NKLANVDDYN DLEGVEIENK FGDVDDTIDL EALGLANEDV TLDGLMEAGT
0201: LKHETQESGA EFNESLDNRV EKIGVADAVE DMDRSKVHIN DSPTKIEVSG DGISLTVDVF GPDCTFYMET DNPMGVNGNE AEGDVSDNQE HTFAVGDLVW
0301: VKMKTDLWWP GMICDPQTSK DAGKCNQVDG FFVKHFGSTS SVWCRPFQLK PFIEYFELMS RQNKSRSFYG AIEKALGEYG RRVKQKMTCS CFSKENQVAA
0401: QNVPSKEDEN GGSAFSASQF EPSKFLKFIK SRALGLLSPS DIEFTVAENC LSAFYSSIGH KQLPLYKLRP TSNQISASKD EDLDKLSSGD SVLKSCRSGS
0501: DDRKMTEMEL SGSLESPRGT RSMISRSQIS NENAGGKSEK GFESRERKKS KYLSYPYVNS WASRKNSLGQ GEDETEDCEE VTPGGVKRSS NPSMVSTPIG
0601: NSSNKTSLRK SRKSVNDNDI CNNADFSAVS SAEMLQGLHQ TARDCFFPIQ STRSIPIRDF YLSFRAFRDP EVQIDEYKEA TLGCPVTFQS DNSLASGGYD
0701: LQVEGQPPPN VLPKKRGGKK SDGINATGPK FSSKTNLPRM TADGTSMNGS PLIDSVQTGP DTLKKGVVHR QRKKAAIAAV VHNEIGILGG LPDLNGNNAG
0801: LSVENMQVIG PAPTQGKLEP KRRRRKKEEL VSENLPDLSK GNTQFIPMLK SVEVTGSLPL EGGPQPDNML GVQGASSLPN AELFAGQPNA NGIHAAGSSL
0901: PNISQITGLV SSAKGEGKKR KRKEKALIIQ NTSSALPDLN GQVTDPNLKG KEVTEMSSVS GQAKPKQKRR RATKSAAIGI PNPNGDHNTL LLYFTPGSPV
1001: PSKEYICATF ASFGPLEESK TLYLNDSTAQ VVFAKDSDAM EALQSLQSRN PFGPSLVSYR LRHVSTSQPA ALLSGAVPSN GEGPDLVVIK QNLESMTTML
1101: EKAGDNISPE IKAKLESEVK GFLEKVSTMV GSSSS
001: MKLQNPDKKT LREGFSQESS VVALDSGVLA MSGLKCDGKF PVKDVLMEEG GDKVRKIQVS GGNISLVVDF SGARTSSNNF FESNASCVNE NLVKGNGYRE
101: DETQEFLVGN LVWVMTKYKK WWPGEVVDFK ADAKESFMVR SIGQSHLVSW FASSKLKPFK ESFEQVLNQR NDNGFFDALQ KAMSLLSNSL KLDMTCSCIA
201: DGNGIVSAQN ITTRKNKPLI LREFSVDRLE PKEFVTQLKN IAKCVLNAGV LESTVMQSQL SAFYTLFGHK QIPMAQLHEN EGRKSFTAKM SDSKFIGSPS
301: ICAGNSRKRF RKEWFRKFVS EVDNVSARDD LVNVPPSDLI SKLKLLAVGY NCSEETENIG LFEWFFSKFR ISVYHDENAY KMQLANMAGF KDLMLATNAN
401: RGTVQKTLKS KKIGKSKMEP LNGVSVADTE QKTFELQISK KSNIESLNGV SVADTEQKTF ELQILEKSNI ESLNGVSTPN IDHEASKSNN SGKTKINHII
501: GHSNFPSSVA KVQLAKDFQD KLLVQAPDRK AMTADTLSRP AAILVPDLNS GGNALGTAEF DHMQRPETLI QHNVCPQEEK TPRSTILNFQ VTAHQGVSGT
601: QFVSSQPTSY KHFTSADLFT YSGKKKRGRK RKNAEELPIV AHASATTGIP DLNGTNTEPT LVLPQVEPTQ RRRRRKKEES PNGLTRGITI LFLKFSSQVS
701: MPSRDDLTST FSAFGPLDSS ETHVSEEFSG AQVAFVSSAD AIEAVKSLEK ANPFGETLVN FRLQQKLITV QRNIAPRMPV ISHVSPVPKP NNIPTSMDAM
801: RQNLLMMTAM LEKSGDSLSR ETKAKLKSEI TGLLEKVSSI PSSSSS
101: DETQEFLVGN LVWVMTKYKK WWPGEVVDFK ADAKESFMVR SIGQSHLVSW FASSKLKPFK ESFEQVLNQR NDNGFFDALQ KAMSLLSNSL KLDMTCSCIA
201: DGNGIVSAQN ITTRKNKPLI LREFSVDRLE PKEFVTQLKN IAKCVLNAGV LESTVMQSQL SAFYTLFGHK QIPMAQLHEN EGRKSFTAKM SDSKFIGSPS
301: ICAGNSRKRF RKEWFRKFVS EVDNVSARDD LVNVPPSDLI SKLKLLAVGY NCSEETENIG LFEWFFSKFR ISVYHDENAY KMQLANMAGF KDLMLATNAN
401: RGTVQKTLKS KKIGKSKMEP LNGVSVADTE QKTFELQISK KSNIESLNGV SVADTEQKTF ELQILEKSNI ESLNGVSTPN IDHEASKSNN SGKTKINHII
501: GHSNFPSSVA KVQLAKDFQD KLLVQAPDRK AMTADTLSRP AAILVPDLNS GGNALGTAEF DHMQRPETLI QHNVCPQEEK TPRSTILNFQ VTAHQGVSGT
601: QFVSSQPTSY KHFTSADLFT YSGKKKRGRK RKNAEELPIV AHASATTGIP DLNGTNTEPT LVLPQVEPTQ RRRRRKKEES PNGLTRGITI LFLKFSSQVS
701: MPSRDDLTST FSAFGPLDSS ETHVSEEFSG AQVAFVSSAD AIEAVKSLEK ANPFGETLVN FRLQQKLITV QRNIAPRMPV ISHVSPVPKP NNIPTSMDAM
801: RQNLLMMTAM LEKSGDSLSR ETKAKLKSEI TGLLEKVSSI PSSSSS
Arabidopsis Description
Serine/Threonine-kinase ATM [Source:UniProtKB/TrEMBL;Acc:A0A1I9LTU3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.