Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY39560 | Canola | nucleus | 59.44 | 62.75 |
| AT3G48187.1 | Thale cress | nucleus | 35.17 | 37.0 |
| Solyc06g071490.1.1 | Tomato | nucleus | 16.85 | 13.22 |
| PGSC0003DMT400069444 | Potato | nucleus | 16.85 | 13.1 |
| KRH17636 | Soybean | nucleus | 9.55 | 11.39 |
| CDY11681 | Canola | nucleus | 6.07 | 10.82 |
| KRG90051 | Soybean | nucleus | 9.1 | 10.52 |
| CDY55692 | Canola | nucleus | 5.06 | 9.93 |
| CDY04873 | Canola | nucleus | 5.06 | 9.78 |
| CDX67452 | Canola | nucleus | 5.17 | 9.22 |
| CDX86465 | Canola | nucleus | 3.71 | 6.24 |
| CDX99976 | Canola | nucleus | 6.52 | 6.2 |
| CDY19729 | Canola | nucleus | 6.97 | 6.04 |
| CDY44440 | Canola | plastid | 3.93 | 5.99 |
| CDY07935 | Canola | nucleus | 3.6 | 5.66 |
| CDX73990 | Canola | nucleus | 3.03 | 4.66 |
| CDX67453 | Canola | cytosol, nucleus, plastid | 1.24 | 3.9 |
| CDY11682 | Canola | cytosol, nucleus, plastid | 0.79 | 2.75 |
| TraesCS3A01G538200.1 | Wheat | nucleus | 1.69 | 0.96 |
Protein Annotations
| EnsemblPlants:CDY48152 | EnsemblPlantsGene:GSBRNA2T00088963001 | Gene3D:2.30.30.140 | InterPro:IPR000313 | InterPro:PWWP_dom | PANTHER:PTHR10688 |
| PANTHER:PTHR10688:SF3 | PFAM:PF00855 | PFscan:PS50812 | ProteinID:CDY48152 | ProteinID:CDY48152.1 | SEG:seg |
| SUPFAM:SSF63748 | UniParc:UPI0004EEC976 | UniProt:A0A078IDK1 | MapMan:35.1 | : | : |
Description
BnaA06g16810DBnaA06g16810D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IDK1]
Coordinates
chrLK032757:+:35361..43680
Molecular Weight (calculated)
97959.4 Da
IEP (calculated)
9.147
GRAVY (calculated)
-0.475
Length
890 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKPLNYKPS QTIYGTRVEQ LRRIRKESLS DDDDDEAEDS TVLFSLSLSF CLNSTLTFTQ SHTFSVAESH CLTSLRAKSG FFRFSSQMKA SMEEDDECFP
101: LGGGDKVRKI EVSGGNISLV VDFSGSLTGA SSHNAFESNV SCLKENQTQE CLVGNLVWAM TKSKKWWPGE VVGYKADAKE SCFMVRYLGE GQLESWCAPS
201: KLRPFKESFE RLVSQRNDVG FFVAVEEAMT LLRNSLRLEM TCSCMSERNG KKPARKAKPL ILREFSVDRL EPKEFVTQLK NLAGCVSSGG ILEATVMQSR
301: LSAFYSFCGH KQIPMDLLNQ NEARRSFNGS KMEESEFVGS PSVVAGSSRR KFRKEWFRKF VSEVDYVSAR EDLVDTSPSD LVSKLKLLAV DSSTCSEETE
401: NVGLFEWFFS KFRISVFHDE NSYRMQLANM AGLNDLMVAK AAISKSKNVG KSKVEPFCGV SVAGAEQKTL ESQKISEKSK IEVTGVANTE QKTFKLQKNS
501: EKSKIEVVGG VSVADADQKA FESNTRAEKY RTYQRASKPK IPGLKTIKDT ISRSDISSSV ANEPSLQGKA CMADTLSRPA ATLVPDLNGG GNGLASAESD
601: HLQKPETLVP PSALPQKERP FSMMLNFQAA AASTAAPRSN YGISGTGYVS SLTDLERKFT SADLCAKVTG TEKKKRGRKR KNPEAAHATN GIPDLNGTTK
701: EPASVPPQAE PTQRRKRRKK EEMPNRSTRG ITVLVLKFSS KESMPSKDDL TSTFSAFGPL DASETHVYEE LSGAEVAFVS SGDAVEAVKS LDKANPFGEN
801: LVSFRLQQKL INVYRNIAPR MPEISHVSPL QKPKNAPISV ESMKQNLMMM TSMLDKSGDH LSRDTKAKLK SDISALLEKI SSMPSSSSSS
101: LGGGDKVRKI EVSGGNISLV VDFSGSLTGA SSHNAFESNV SCLKENQTQE CLVGNLVWAM TKSKKWWPGE VVGYKADAKE SCFMVRYLGE GQLESWCAPS
201: KLRPFKESFE RLVSQRNDVG FFVAVEEAMT LLRNSLRLEM TCSCMSERNG KKPARKAKPL ILREFSVDRL EPKEFVTQLK NLAGCVSSGG ILEATVMQSR
301: LSAFYSFCGH KQIPMDLLNQ NEARRSFNGS KMEESEFVGS PSVVAGSSRR KFRKEWFRKF VSEVDYVSAR EDLVDTSPSD LVSKLKLLAV DSSTCSEETE
401: NVGLFEWFFS KFRISVFHDE NSYRMQLANM AGLNDLMVAK AAISKSKNVG KSKVEPFCGV SVAGAEQKTL ESQKISEKSK IEVTGVANTE QKTFKLQKNS
501: EKSKIEVVGG VSVADADQKA FESNTRAEKY RTYQRASKPK IPGLKTIKDT ISRSDISSSV ANEPSLQGKA CMADTLSRPA ATLVPDLNGG GNGLASAESD
601: HLQKPETLVP PSALPQKERP FSMMLNFQAA AASTAAPRSN YGISGTGYVS SLTDLERKFT SADLCAKVTG TEKKKRGRKR KNPEAAHATN GIPDLNGTTK
701: EPASVPPQAE PTQRRKRRKK EEMPNRSTRG ITVLVLKFSS KESMPSKDDL TSTFSAFGPL DASETHVYEE LSGAEVAFVS SGDAVEAVKS LDKANPFGEN
801: LVSFRLQQKL INVYRNIAPR MPEISHVSPL QKPKNAPISV ESMKQNLMMM TSMLDKSGDH LSRDTKAKLK SDISALLEKI SSMPSSSSSS
001: MKLQNPDKKT LREGFSQESS VVALDSGVLA MSGLKCDGKF PVKDVLMEEG GDKVRKIQVS GGNISLVVDF SGARTSSNNF FESNASCVNE NLVKGNGYRE
101: DETQEFLVGN LVWVMTKYKK WWPGEVVDFK ADAKESFMVR SIGQSHLVSW FASSKLKPFK ESFEQVLNQR NDNGFFDALQ KAMSLLSNSL KLDMTCSCIA
201: DGNGIVSAQN ITTRKNKPLI LREFSVDRLE PKEFVTQLKN IAKCVLNAGV LESTVMQSQL SAFYTLFGHK QIPMAQLHEN EGRKSFTAKM SDSKFIGSPS
301: ICAGNSRKRF RKEWFRKFVS EVDNVSARDD LVNVPPSDLI SKLKLLAVGY NCSEETENIG LFEWFFSKFR ISVYHDENAY KMQLANMAGF KDLMLATNAN
401: RGTVQKTLKS KKIGKSKMEP LNGVSVADTE QKTFELQISK KSNIESLNGV SVADTEQKTF ELQILEKSNI ESLNGVSTPN IDHEASKSNN SGKTKINHII
501: GHSNFPSSVA KVQLAKDFQD KLLVQAPDRK AMTADTLSRP AAILVPDLNS GGNALGTAEF DHMQRPETLI QHNVCPQEEK TPRSTILNFQ VTAHQGVSGT
601: QFVSSQPTSY KHFTSADLFT YSGKKKRGRK RKNAEELPIV AHASATTGIP DLNGTNTEPT LVLPQVEPTQ RRRRRKKEES PNGLTRGITI LFLKFSSQVS
701: MPSRDDLTST FSAFGPLDSS ETHVSEEFSG AQVAFVSSAD AIEAVKSLEK ANPFGETLVN FRLQQKLITV QRNIAPRMPV ISHVSPVPKP NNIPTSMDAM
801: RQNLLMMTAM LEKSGDSLSR ETKAKLKSEI TGLLEKVSSI PSSSSS
101: DETQEFLVGN LVWVMTKYKK WWPGEVVDFK ADAKESFMVR SIGQSHLVSW FASSKLKPFK ESFEQVLNQR NDNGFFDALQ KAMSLLSNSL KLDMTCSCIA
201: DGNGIVSAQN ITTRKNKPLI LREFSVDRLE PKEFVTQLKN IAKCVLNAGV LESTVMQSQL SAFYTLFGHK QIPMAQLHEN EGRKSFTAKM SDSKFIGSPS
301: ICAGNSRKRF RKEWFRKFVS EVDNVSARDD LVNVPPSDLI SKLKLLAVGY NCSEETENIG LFEWFFSKFR ISVYHDENAY KMQLANMAGF KDLMLATNAN
401: RGTVQKTLKS KKIGKSKMEP LNGVSVADTE QKTFELQISK KSNIESLNGV SVADTEQKTF ELQILEKSNI ESLNGVSTPN IDHEASKSNN SGKTKINHII
501: GHSNFPSSVA KVQLAKDFQD KLLVQAPDRK AMTADTLSRP AAILVPDLNS GGNALGTAEF DHMQRPETLI QHNVCPQEEK TPRSTILNFQ VTAHQGVSGT
601: QFVSSQPTSY KHFTSADLFT YSGKKKRGRK RKNAEELPIV AHASATTGIP DLNGTNTEPT LVLPQVEPTQ RRRRRKKEES PNGLTRGITI LFLKFSSQVS
701: MPSRDDLTST FSAFGPLDSS ETHVSEEFSG AQVAFVSSAD AIEAVKSLEK ANPFGETLVN FRLQQKLITV QRNIAPRMPV ISHVSPVPKP NNIPTSMDAM
801: RQNLLMMTAM LEKSGDSLSR ETKAKLKSEI TGLLEKVSSI PSSSSS
Arabidopsis Description
Serine/Threonine-kinase ATM [Source:UniProtKB/TrEMBL;Acc:A0A1I9LTU3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.