CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra028857.1-P	Field mustard	nucleus	98.91	98.91
CDY55692	Canola	nucleus	78.04	79.25
AT5G02950.2	Thale cress	nucleus	43.7	31.8
CDX73990	Canola	nucleus	35.43	28.15
CDY07935	Canola	nucleus	34.13	27.79
CDY11682	Canola	cytosol, nucleus, plastid	14.35	25.88
HORVU3Hr1G117740.2	Barley	nucleus	10.22	24.48
CDX67453	Canola	cytosol, nucleus, plastid	14.35	23.4
KRH32403	Soybean	nucleus	33.91	23.25
Os05t0122500-00	Rice	nucleus	24.13	21.06
KRH19811	Soybean	nucleus	35.43	20.95
EES18937	Sorghum	nucleus, plastid	22.83	20.75
PGSC0003DMT400087303	Potato	nucleus	34.13	20.36
TraesCS1D01G060800.1	Wheat	cytosol	23.7	19.96
TraesCS1D01G060900.1	Wheat	nucleus	23.48	19.85
HORVU1Hr1G071710.17	Barley	endoplasmic reticulum	23.48	19.6
VIT_08s0040g02440.t01	Wine grape	nucleus	37.61	19.48
TraesCS1B01G077900.1	Wheat	nucleus	23.48	19.39
Zm00001d010984_P001	Maize	plastid	21.09	18.98
TraesCS1A01G059600.1	Wheat	cytosol	22.39	18.83
TraesCS1A01G059700.1	Wheat	cytosol	15.0	18.55
Os05t0463500-01	Rice	nucleus	18.48	18.52
TraesCS1B01G077800.1	Wheat	cytosol	21.96	18.33
GSMUA_Achr9P04320_001	Banana	nucleus	28.91	17.41
HORVU1Hr1G012310.1	Barley	cytosol, nucleus	13.91	16.89
HORVU1Hr1G012320.1	Barley	cytosol, nucleus	13.26	16.22
TraesCS1B01G297600.1	Wheat	nucleus	25.87	16.06
TraesCS1A01G288200.1	Wheat	nucleus	26.3	15.9
GSMUA_Achr8P02720_001	Banana	nucleus	28.26	15.46
Os05t0463400-01	Rice	nucleus	20.65	15.3
TraesCS1D01G287200.1	Wheat	nucleus	25.22	15.28
GSMUA_Achr10P...	Banana	nucleus	23.48	15.23
CDX86465	Canola	nucleus	17.39	15.12
Zm00001d041940_P001	Maize	nucleus	26.3	14.29
GSMUA_Achr11P...	Banana	nucleus	22.39	14.11
Zm00001d011770_P001	Maize	nucleus	26.09	13.5
KXG34235	Sorghum	nucleus	25.87	13.33
CDY44440	Canola	plastid	16.74	13.18
CDY11681	Canola	nucleus	13.26	12.22
CDX99976	Canola	nucleus	23.04	11.32
CDX67452	Canola	nucleus	12.17	11.22
TraesCS1B01G297800.1	Wheat	nucleus	28.04	10.79
TraesCS1D01G287400.1	Wheat	nucleus	27.83	10.64
CDY19729	Canola	nucleus	23.04	10.33
HORVU1Hr1G071590.1	Barley	nucleus	28.26	10.19
TraesCS1A01G288400.1	Wheat	nucleus	26.52	10.18
Zm00001d038396_P003	Maize	nucleus	29.78	10.15
OQU78150	Sorghum	nucleus	29.78	9.89
GSMUA_Achr5P29300_001	Banana	nucleus	33.48	9.73
Os11t0303500-01	Rice	nucleus	14.78	9.39
Solyc09g007340.2.1	Tomato	cytosol	34.35	7.46
Zm00001d010556_P002	Maize	nucleus	29.78	7.38
TraesCS3B01G603700.1	Wheat	nucleus	2.83	6.74
TraesCS3B01G603600.1	Wheat	nucleus	19.13	5.8
HORVU3Hr1G117730.2	Barley	nucleus, plastid	21.74	5.69
CDY39560	Canola	nucleus	9.78	5.34
CDY48152	Canola	nucleus	9.78	5.06
TraesCS3D01G543800.1	Wheat	nucleus	16.3	4.9

Protein Annotations

EnsemblPlants:CDY04873	EnsemblPlantsGene:GSBRNA2T00119590001	Gene3D:2.30.30.140	InterPro:IPR000313	InterPro:PWWP_dom	PANTHER:PTHR42851
PANTHER:PTHR42851:SF2	PFAM:PF00855	PFscan:PS50812	ProteinID:CDY04873	ProteinID:CDY04873.1	SEG:seg
SMART:SM00293	SUPFAM:SSF63748	UniParc:UPI0004EF3EBB	MapMan:35.2	:	:

Description

BnaAnng00550D

Coordinates

chrLK031958:+:473239..474621

Molecular Weight (calculated)

51503.4 Da

IEP (calculated)

6.400

GRAVY (calculated)

-0.636

Length

460 amino acids

Sequence
(BLAST)

001: MSTDSEADVN ASTFESGESD SESESTGIDA DSQRSKLESL KKLSTDSDLV WGKVSSFPWW PGQVFLDSSV ASKKAKKHFK KGAFLVAYFG DCSFAWNDAS
101: KIKPFHRHFS QMVEQSDAPE FRNAVGCALE EVSRRVECGL SCGCVTEEAY ERVETQRVMN AGIREESRVR YGGDEVSSAG LFEPAKVVEY MKRLACFPRY
201: DESDELVFVS NRARLFAFQQ WRSCINFPRY ETFLKDVSDA KREEKTLSDC IADKRVGKKR KVESLESGKP EKKIKKVTEP CFLMGAIPLR MESEMMTHTL
301: SLKRTPQPLN LEHSNYEDFE KFLEETCCSN LNQDSEKASI PSDVKESSEQ PESGSKEQTG VKDCSGDSSA APNALILKFA SSGSVPSEEK LNSIFNRYGP
401: LRESETRVMK KGKKARVVFR RGEDAETAFS SSGKYSIFGP SLLSYSLKYV GPKAKESNMI

Best Arabidopsis Sequence Match ( AT5G02950.1 )
(BLAST)

001: MSTEPEGVES DSNADFAINA SSFDYGMAHT SETLADPMSF QAQDLVVNLT GVERKVFVSA RDDKDSLCNG VDFDADSDLL KNKDKKGFSK ENLKLFDSDL
101: VWAKLRSYPW WPGLVFDKSV ASKAAMRHFK KGNVLVAYFG DCTFAWNNAS QIKPFHQNFS QMQEQSNSAE FRDAIDCALD EVSRRVEFGL SCSCVSEEAY
201: NKLKTQNIIN AGIREDSSVR YGGDKLSDGI SFEPAKLVDY MKHLACFPCY DATEKLQFVI NRAQVLAFQQ WKDYSHFIDY ETFVRSVESA ATLASLPEVN
301: MDEGISAKKR KTDYKDNAEQ TKEKTLSDLT VKKRCGSRST EKLDGKSHSE KKRKVESSES GKSEKRIKKS QQKEDSVSKH SNEESLLSVG DTNKLQKTAE
401: PCHGTGVENE MNSLTPTLKP CRASKSTEVE NEKTKKPRHQ ELAERKISSP DEMLSSLHAA NTSTGIPDSI NIDPSNYEDF EKFINELFCS KLNGDSKKAS
501: ITETSEPCDK KDSAEEEILP ANKEITGSGS KEQIGLKDCS ADSLPPYALV LNFADSGSVP SEEKLNEIFK RYGPLHESKT KVTMKGKRAK VVFKRGEDAK
601: TAFSSAGKYS IFGPSLLSYR LEYVCPKRKK TT

Arabidopsis Description

Tudor/PWWP/MBT superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LYZ0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.