Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU1Hr1G071710.17 | Barley | endoplasmic reticulum | 53.23 | 73.32 |
| TraesCS1A01G288200.1 | Wheat | nucleus | 68.12 | 67.94 |
| TraesCS1B01G297600.1 | Wheat | nucleus | 63.24 | 64.78 |
| Os05t0463400-01 | Rice | nucleus | 23.72 | 28.99 |
| Bra028857.1-P | Field mustard | nucleus | 15.28 | 25.22 |
| CDY04873 | Canola | nucleus | 15.28 | 25.22 |
| CDY55692 | Canola | nucleus | 15.02 | 25.17 |
| TraesCS1D01G287400.1 | Wheat | nucleus | 37.55 | 23.69 |
| KRH32403 | Soybean | nucleus | 19.24 | 21.76 |
| TraesCS1D01G060800.1 | Wheat | cytosol | 14.49 | 20.15 |
| AT5G02950.2 | Thale cress | nucleus | 16.73 | 20.09 |
| KRH19811 | Soybean | nucleus | 20.03 | 19.54 |
| TraesCS1D01G060900.1 | Wheat | nucleus | 13.83 | 19.3 |
| GSMUA_Achr8P02720_001 | Banana | nucleus | 20.82 | 18.79 |
| CDX73990 | Canola | nucleus | 13.44 | 17.62 |
| CDY07935 | Canola | nucleus | 13.04 | 17.52 |
| Solyc04g049950.1.1 | Tomato | nucleus | 10.01 | 16.78 |
| VIT_08s0040g02440.t01 | Wine grape | nucleus | 19.5 | 16.67 |
| PGSC0003DMT400087303 | Potato | nucleus | 16.47 | 16.21 |
| KRH33337 | Soybean | nucleus | 20.69 | 15.41 |
| KRH70385 | Soybean | nucleus | 20.16 | 15.07 |
| KRH34572 | Soybean | nucleus | 15.94 | 14.86 |
| AT3G09670.1 | Thale cress | nucleus | 13.57 | 14.19 |
| Bra001301.1-P | Field mustard | nucleus | 6.06 | 13.61 |
| GSMUA_Achr5P29300_001 | Banana | nucleus | 25.82 | 12.39 |
| TraesCS1D01G097400.1 | Wheat | plastid | 13.44 | 9.79 |
| PGSC0003DMT400027409 | Potato | nucleus | 19.1 | 8.76 |
| VIT_13s0019g03620.t01 | Wine grape | nucleus | 20.29 | 8.2 |
| KRG92228 | Soybean | nucleus | 17.92 | 7.79 |
| Solyc09g007340.2.1 | Tomato | cytosol | 18.58 | 6.65 |
| TraesCS3D01G543800.1 | Wheat | nucleus | 10.8 | 5.36 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G287200.1 | EnsemblPlantsGene:TraesCS1D01G287200 | Gene3D:2.30.30.140 | InterPro:IPR000313 | InterPro:PWWP_dom | PANTHER:PTHR42851 |
| PANTHER:PTHR42851:SF4 | PFAM:PF00855 | PFscan:PS50812 | SEG:seg | SMART:SM00293 | SUPFAM:SSF63748 |
| TIGR:cd05162 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr1D:+:385618644..385621132
Molecular Weight (calculated)
83429.1 Da
IEP (calculated)
4.974
GRAVY (calculated)
-0.526
Length
759 amino acids
Sequence
(BLAST)
(BLAST)
001: MIWLSGMEGG GDPEGRDELP LVDASTDGEA MAQGSFGEAD FDAMMVESGG LQGEEVGSSL AQVQNIAADT AEISDPAVPQ HDAEAESNED GQRVRYRLPP
101: LDKDGFRVSD LVWAKLQGRP WWPGAIFDPS DASELALEHQ KEGHHLVAFF GDGSFAWCQE SQLKPFMDNC LEMEKQGNSD AFTSAVNSAL QELSTRILTA
201: ASCSCLPEYL SENGLCYLRG NSGLKAGVTC SKVNQAEILQ YFSPEHLLHY MKSLALSPCQ GGVLQDLVIA CSQLMSFYRS KGYGEIASFQ SGSAWAEDVI
301: DTTATNEVQP SHVKPKRGRG RPRKRKPDDN IELAEGRPIV KPQNEPIVHN NIGETECGEV DIYVKKPAKR RRVQRRHGVD TKDLLSGMAA STEMSMIGKT
401: EGDRSEEWKF LPCPKEETTD HMQDAYWSGL SLHTVSTHSL KGASGKTRPI RRRRPTRRTC APSSDLSSPV QNMQPETLDV NRKIEVIKRS IIHVDEKMVH
501: DVNPTALVLC FGKSIALPSE MDFIRMFSRY GPLKETETEV HKNTNTAKVV FRKRVDAERA FSVAGNFGSF GPSLRSFRLA NMPFSLTTEL NYPKLRSEDG
601: GMEIPACRVS GVALDSAQIG IVDKADKGET VGNPSVEHTE MVKLAGQYEG NTERALHAGG RNEESPDVLS DTMQTGIVDD TPKHKLVCVH GVVEASEDTM
701: EVDNTDETRE ETSMPRDLRA QAFTGYVQKQ SVGDEYTLQG IEGSTVEMPV GEARKFSCC
101: LDKDGFRVSD LVWAKLQGRP WWPGAIFDPS DASELALEHQ KEGHHLVAFF GDGSFAWCQE SQLKPFMDNC LEMEKQGNSD AFTSAVNSAL QELSTRILTA
201: ASCSCLPEYL SENGLCYLRG NSGLKAGVTC SKVNQAEILQ YFSPEHLLHY MKSLALSPCQ GGVLQDLVIA CSQLMSFYRS KGYGEIASFQ SGSAWAEDVI
301: DTTATNEVQP SHVKPKRGRG RPRKRKPDDN IELAEGRPIV KPQNEPIVHN NIGETECGEV DIYVKKPAKR RRVQRRHGVD TKDLLSGMAA STEMSMIGKT
401: EGDRSEEWKF LPCPKEETTD HMQDAYWSGL SLHTVSTHSL KGASGKTRPI RRRRPTRRTC APSSDLSSPV QNMQPETLDV NRKIEVIKRS IIHVDEKMVH
501: DVNPTALVLC FGKSIALPSE MDFIRMFSRY GPLKETETEV HKNTNTAKVV FRKRVDAERA FSVAGNFGSF GPSLRSFRLA NMPFSLTTEL NYPKLRSEDG
601: GMEIPACRVS GVALDSAQIG IVDKADKGET VGNPSVEHTE MVKLAGQYEG NTERALHAGG RNEESPDVLS DTMQTGIVDD TPKHKLVCVH GVVEASEDTM
701: EVDNTDETRE ETSMPRDLRA QAFTGYVQKQ SVGDEYTLQG IEGSTVEMPV GEARKFSCC
001: MSTEPEGVES DSNADFAINA SSFDYGMAHT SETLADPMSF QAQDLVVNLT GVERKVFVSA RDDKDSLCNG VDFDADSDLL KNKDKKGFSK ENLKLFDSDL
101: VWAKLRSYPW WPGLVFDKSV ASKAAMRHFK KGNVLVAYFG DCTFAWNNAS QIKPFHQNFS QMQEQSNSAE FRDAIDCALD EVSRRVEFGL SCSCVSEEAY
201: NKLKTQNIIN AGIREDSSVR YGGDKLSDGI SFEPAKLVDY MKHLACFPCY DATEKLQFVI NRAQVLAFQQ WKDYSHFIDY ETFVRSVESA ATLASLPEVN
301: MDEGISAKKR KTDYKDNAEQ TKEKTLSDLT VKKRCGSRST EKLDGKSHSE KKRKVESSES GKSEKRIKKS QQKEDSVSKH SNEESLLSVG DTNKLQKTAE
401: PCHGTGVENE MNSLTPTLKP CRASKSTEVE NEKTKKPRHQ ELAERKISSP DEMLSSLHAA NTSTGIPDSI NIDPSNYEDF EKFINELFCS KLNGDSKKAS
501: ITETSEPCDK KDSAEEEILP ANKEITGSGS KEQIGLKDCS ADSLPPYALV LNFADSGSVP SEEKLNEIFK RYGPLHESKT KVTMKGKRAK VVFKRGEDAK
601: TAFSSAGKYS IFGPSLLSYR LEYVCPKRKK TT
101: VWAKLRSYPW WPGLVFDKSV ASKAAMRHFK KGNVLVAYFG DCTFAWNNAS QIKPFHQNFS QMQEQSNSAE FRDAIDCALD EVSRRVEFGL SCSCVSEEAY
201: NKLKTQNIIN AGIREDSSVR YGGDKLSDGI SFEPAKLVDY MKHLACFPCY DATEKLQFVI NRAQVLAFQQ WKDYSHFIDY ETFVRSVESA ATLASLPEVN
301: MDEGISAKKR KTDYKDNAEQ TKEKTLSDLT VKKRCGSRST EKLDGKSHSE KKRKVESSES GKSEKRIKKS QQKEDSVSKH SNEESLLSVG DTNKLQKTAE
401: PCHGTGVENE MNSLTPTLKP CRASKSTEVE NEKTKKPRHQ ELAERKISSP DEMLSSLHAA NTSTGIPDSI NIDPSNYEDF EKFINELFCS KLNGDSKKAS
501: ITETSEPCDK KDSAEEEILP ANKEITGSGS KEQIGLKDCS ADSLPPYALV LNFADSGSVP SEEKLNEIFK RYGPLHESKT KVTMKGKRAK VVFKRGEDAK
601: TAFSSAGKYS IFGPSLLSYR LEYVCPKRKK TT
Arabidopsis Description
Tudor/PWWP/MBT superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LYZ0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.