CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH33337	Soybean	nucleus	67.78	67.52
KRH34572	Soybean	nucleus	34.19	42.63
Solyc04g049950.1.1	Tomato	nucleus	14.19	31.79
KRH32403	Soybean	nucleus	19.61	29.66
Os05t0463500-01	Rice	nucleus	12.32	27.23
KRH19811	Soybean	nucleus	19.8	25.84
HORVU1Hr1G071710.17	Barley	endoplasmic reticulum	13.4	24.68
HORVU3Hr1G117740.2	Barley	nucleus	4.63	24.48
GSMUA_Achr10P...	Banana	nucleus	17.04	24.4
Os05t0122500-00	Rice	nucleus	12.61	24.29
GSMUA_Achr8P02720_001	Banana	nucleus	20.1	24.26
GSMUA_Achr9P04320_001	Banana	nucleus	18.03	23.95
EES18937	Sorghum	nucleus, plastid	11.53	23.12
Zm00001d010984_P001	Maize	plastid	11.53	22.9
TraesCS1D01G060800.1	Wheat	cytosol	12.12	22.53
TraesCS1B01G077900.1	Wheat	nucleus	12.22	22.26
TraesCS1B01G077800.1	Wheat	cytosol	12.02	22.14
TraesCS1A01G059700.1	Wheat	cytosol	8.08	22.04
TraesCS1A01G059600.1	Wheat	cytosol	11.82	21.94
HORVU1Hr1G012310.1	Barley	cytosol, nucleus	8.08	21.64
TraesCS1D01G060900.1	Wheat	nucleus	11.43	21.32
KRH56588	Soybean	nucleus	14.88	21.15
TraesCS1B01G297600.1	Wheat	nucleus	14.78	20.24
TraesCS1D01G287200.1	Wheat	nucleus	15.07	20.16
GSMUA_Achr11P...	Banana	nucleus	14.29	19.86
Os05t0463400-01	Rice	nucleus	12.12	19.81
KRG92228	Soybean	nucleus	33.99	19.77
VIT_13s0019g03620.t01	Wine grape	nucleus	36.45	19.71
TraesCS1A01G288200.1	Wheat	nucleus	14.68	19.58
HORVU1Hr1G012320.1	Barley	cytosol, nucleus	7.0	18.88
PGSC0003DMT400027409	Potato	nucleus	30.74	18.84
TraesCS1B01G297800.1	Wheat	nucleus	21.77	18.48
Zm00001d041940_P001	Maize	nucleus	15.37	18.42
Zm00001d011770_P001	Maize	nucleus	15.66	17.89
KXG34235	Sorghum	nucleus	15.57	17.69
TraesCS1A01G288400.1	Wheat	nucleus	20.79	17.6
TraesCS1D01G287400.1	Wheat	nucleus	20.69	17.46
HORVU1Hr1G071590.1	Barley	nucleus	21.38	17.01
KRH07190	Soybean	nucleus	15.57	16.86
OQU78150	Sorghum	nucleus	22.86	16.75
Zm00001d038396_P003	Maize	nucleus	21.77	16.37
KRG94143	Soybean	nucleus	14.88	16.29
KRG93266	Soybean	nucleus	17.44	16.13
Os11t0303500-01	Rice	nucleus	11.13	15.61
GSMUA_Achr5P29300_001	Banana	nucleus	22.86	14.66
KRH33902	Soybean	nucleus	13.1	12.73
Zm00001d010556_P002	Maize	nucleus	22.96	12.55
KRG92886	Soybean	nucleus	12.81	12.31
KRG96822	Soybean	nucleus	12.12	11.44
TraesCS3B01G603600.1	Wheat	nucleus	11.82	7.91
TraesCS3B01G603700.1	Wheat	nucleus	1.48	7.77
KRH17636	Soybean	nucleus	5.12	6.97
HORVU3Hr1G117730.2	Barley	nucleus, plastid	11.92	6.89
TraesCS3D01G543800.1	Wheat	nucleus	9.26	6.14
KRG90051	Soybean	nucleus	4.33	5.71

Protein Annotations

EMBL:ACUP02000769	EnsemblPlants:KRH70385	EnsemblPlantsGene:GLYMA_02G087500	EntrezGene:100813734	Gene3D:2.30.30.140	InterPro:IPR000313
InterPro:PWWP_dom	PANTHER:PTHR42851	PANTHER:PTHR42851:SF4	PFAM:PF00855	PFscan:PS50812	ProteinID:KRH70385
ProteinID:KRH70385.1	SEG:seg	SMART:SM00293	SUPFAM:SSF63748	UniParc:UPI00029606F2	UniProt:K7K770
MapMan:35.2	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:7633077..7638369

Molecular Weight (calculated)

111398.0 Da

IEP (calculated)

4.570

GRAVY (calculated)

-0.650

Length

1015 amino acids

Sequence
(BLAST)

0001: MEEQEKGLCG ASETTVTHEE KVRIETLEGS VDCGGEVLME GSFTEDLVGE GGTCNGKDVM VEVLGSDVYI DGVCTHENGA ELSGEVGGGG SVECGEDLGK
0101: DFRSGGVGCG DSHGVESEEG RSENVAMKLD SVVLGREDRD EAVVGSGEVG AASFQGESLL DNRAHKEVWI EVSNVEDLMV ADVGVECTNA PDAETTDHKV
0201: NNAVGFPLGG ENVQVSSDTG QGVDKDSTIE EELNKNVFDA EKCDLRKGVE VEAEGQPEAE STKTTNHTSD IEGEDTQIAD QDNLALMDAG QEEVHDESNI
0301: RQNVEVHTGI SEQLGSNGGQ EVEEFIKAEQ RKLEGRVTRR TSLMKSMSSE SFHHARYLLP IEKEGEFSVS DMVWGKVRSH PWWPGQIFDP SDSSEKAMKH
0401: YKKDCHLVAY FGDRTFAWNE ESQLKPFRTH FSSIEKQSTS ESFQNAVDCA VDEVTRRAEY GLACSCIPKD TYDSIKFQNV ENTGIRPELS VRHGADESLN
0501: ANSFSPSNLV EYLKTLSALP TGGFDRLELG IAKAQLLAFH RFKGYSCLPE LQYCGGFDDD MDSLVHHDEN NHAAPVSKND GPAGSANLKN QSSSRRKRKH
0601: NLKDIMHEKK ERSLSELMGG TLDSPDGDYW SDEKVTDNLV SPGRSKKKRT VDHYADDFGK PDGRKTISVA KVSNTTKSSF LIGDRIRRVA SKLTGSPSMV
0701: KSSGDRSQKT DGSADGFSGN GPDFSFEEAQ RSNMVAPTEY SSLDDLLSSL RLVAQEPLGD YSFLNPIVSF FYDFRNSIVV ADDSVKDIFC KEKVGTKRKK
0801: PLTAGLPETF EFEDMSDTYW TDRVIDNGSE AQPAQPCQPP QPARRNRKKD HQLVPTEPGK PVQVSRRPYS RKQYSNNNHI EAPAKPPGYI DENAPAELVM
0901: NFAELGSVPS ETNLNKMFRR FGPLKEAETE VDTVSSRARV VFKKCVDAEV ACSSAQKFNI FGPILVNYQL NYTPSALFKA SSVATTQDQE MHLDLSNFEV
1001: NIIGSVDDDV AAKFG

Best Arabidopsis Sequence Match ( AT5G02950.1 )
(BLAST)

001: MSTEPEGVES DSNADFAINA SSFDYGMAHT SETLADPMSF QAQDLVVNLT GVERKVFVSA RDDKDSLCNG VDFDADSDLL KNKDKKGFSK ENLKLFDSDL
101: VWAKLRSYPW WPGLVFDKSV ASKAAMRHFK KGNVLVAYFG DCTFAWNNAS QIKPFHQNFS QMQEQSNSAE FRDAIDCALD EVSRRVEFGL SCSCVSEEAY
201: NKLKTQNIIN AGIREDSSVR YGGDKLSDGI SFEPAKLVDY MKHLACFPCY DATEKLQFVI NRAQVLAFQQ WKDYSHFIDY ETFVRSVESA ATLASLPEVN
301: MDEGISAKKR KTDYKDNAEQ TKEKTLSDLT VKKRCGSRST EKLDGKSHSE KKRKVESSES GKSEKRIKKS QQKEDSVSKH SNEESLLSVG DTNKLQKTAE
401: PCHGTGVENE MNSLTPTLKP CRASKSTEVE NEKTKKPRHQ ELAERKISSP DEMLSSLHAA NTSTGIPDSI NIDPSNYEDF EKFINELFCS KLNGDSKKAS
501: ITETSEPCDK KDSAEEEILP ANKEITGSGS KEQIGLKDCS ADSLPPYALV LNFADSGSVP SEEKLNEIFK RYGPLHESKT KVTMKGKRAK VVFKRGEDAK
601: TAFSSAGKYS IFGPSLLSYR LEYVCPKRKK TT

Arabidopsis Description

Tudor/PWWP/MBT superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LYZ0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.