Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 3
- vacuole 2
- plasma membrane 2
- golgi 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G287200.1 | Wheat | nucleus | 73.32 | 53.23 |
| TraesCS1B01G297600.1 | Wheat | nucleus | 65.34 | 48.58 |
| TraesCS1A01G288200.1 | Wheat | nucleus | 64.61 | 46.78 |
| Os05t0463400-01 | Rice | nucleus | 29.76 | 26.41 |
| HORVU3Hr1G117740.2 | Barley | nucleus | 8.89 | 25.52 |
| Bra028857.1-P | Field mustard | nucleus | 19.78 | 23.7 |
| CDY55692 | Canola | nucleus | 19.42 | 23.62 |
| CDY04873 | Canola | nucleus | 19.6 | 23.48 |
| KRH32403 | Soybean | nucleus | 23.59 | 19.37 |
| HORVU1Hr1G071590.1 | Barley | nucleus | 44.1 | 19.04 |
| AT5G02950.2 | Thale cress | nucleus | 20.87 | 18.2 |
| KRH19811 | Soybean | nucleus | 25.23 | 17.87 |
| HORVU1Hr1G012320.1 | Barley | cytosol, nucleus | 11.98 | 17.55 |
| GSMUA_Achr8P02720_001 | Banana | nucleus | 25.59 | 16.77 |
| CDY07935 | Canola | nucleus | 16.52 | 16.11 |
| HORVU1Hr1G012310.1 | Barley | cytosol, nucleus | 11.07 | 16.09 |
| PGSC0003DMT400087303 | Potato | nucleus | 22.14 | 15.82 |
| CDX73990 | Canola | nucleus | 16.52 | 15.72 |
| VIT_08s0040g02440.t01 | Wine grape | nucleus | 23.23 | 14.41 |
| Solyc04g049950.1.1 | Tomato | nucleus | 11.25 | 13.69 |
| KRH34572 | Soybean | nucleus | 20.15 | 13.64 |
| KRH33337 | Soybean | nucleus | 25.05 | 13.54 |
| KRH70385 | Soybean | nucleus | 24.68 | 13.4 |
| AT3G09670.1 | Thale cress | nucleus | 16.52 | 12.53 |
| Bra001301.1-P | Field mustard | nucleus | 7.62 | 12.43 |
| GSMUA_Achr5P29300_001 | Banana | nucleus | 30.31 | 10.56 |
| HORVU1Hr1G020500.2 | Barley | nucleus, plastid | 15.79 | 7.99 |
| PGSC0003DMT400027409 | Potato | nucleus | 23.59 | 7.85 |
| VIT_13s0019g03620.t01 | Wine grape | nucleus | 24.32 | 7.14 |
| KRG92228 | Soybean | nucleus | 22.5 | 7.11 |
| HORVU3Hr1G117730.2 | Barley | nucleus, plastid | 19.06 | 5.98 |
| Solyc09g007340.2.1 | Tomato | cytosol | 21.78 | 5.66 |
Protein Annotations
| EnsemblPlants:HORVU1Hr1G071710.17 | EnsemblPlantsGene:HORVU1Hr1G071710 | Gene3D:2.30.30.140 | InterPro:IPR000313 | InterPro:PWWP_dom | PANTHER:PTHR42851 |
| PANTHER:PTHR42851:SF4 | PFAM:PF00855 | PFscan:PS50812 | SEG:seg | SignalP:SignalP-noTM | SMART:SM00293 |
| SUPFAM:SSF63748 | UniParc:UPI000B48968E | UniProt:A0A287G5U7 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chrchr1H:+:494491287..494493864
Molecular Weight (calculated)
61756.2 Da
IEP (calculated)
8.296
GRAVY (calculated)
-0.414
Length
551 amino acids
Sequence
(BLAST)
(BLAST)
001: SMMLKPVSIL MMSVLDTISL PLIEMGFKGV VWAKLEGHPW WPGEIFDPSD ASELALKHQK EGHHLVAFYG DGSFAWCHES QFKPFMENRA EMEKQCNSDA
101: FAIAVNGALQ ELSRRILAAA SCSCLPEELS ENGMSYIGEN AGLKTGFTCS KVNQAEILKY FSPEHLLHYM KLLALSPCQG GVLQDLVIAC SQLMSFYRSK
201: GYAEIASFQS GSAWAENNID TTVTNEVQPS HVKPKRGRGR PRKRKPDDNV ELTEGRPIVK PQNGPAVHNN IGETECGEFD ISMKKPAKRR RVQRRYDVDP
301: KDLSGMAAST EMGMIEKTEG DGSEEWKMLP CPKEEITDHM QDAYWSGLSL HTVSTQSLKG ASGKTRPIRR RRATRRTCAP SSDLSSPVQN MHPETLDVNR
401: KIEVIKRSII HVDEKMLHDV NPTALVFCFG KSIALPSKMD FIRMFSRYGP LKETETETHK NTNTVKVVFR KRVDAERAFS AAGNFGSFGP SLRSFRLVNM
501: PFSLRTTELS YPMLRPEDSS MEIPVCRVSG VALDYAQIDI FESTKLTKVR L
101: FAIAVNGALQ ELSRRILAAA SCSCLPEELS ENGMSYIGEN AGLKTGFTCS KVNQAEILKY FSPEHLLHYM KLLALSPCQG GVLQDLVIAC SQLMSFYRSK
201: GYAEIASFQS GSAWAENNID TTVTNEVQPS HVKPKRGRGR PRKRKPDDNV ELTEGRPIVK PQNGPAVHNN IGETECGEFD ISMKKPAKRR RVQRRYDVDP
301: KDLSGMAAST EMGMIEKTEG DGSEEWKMLP CPKEEITDHM QDAYWSGLSL HTVSTQSLKG ASGKTRPIRR RRATRRTCAP SSDLSSPVQN MHPETLDVNR
401: KIEVIKRSII HVDEKMLHDV NPTALVFCFG KSIALPSKMD FIRMFSRYGP LKETETETHK NTNTVKVVFR KRVDAERAFS AAGNFGSFGP SLRSFRLVNM
501: PFSLRTTELS YPMLRPEDSS MEIPVCRVSG VALDYAQIDI FESTKLTKVR L
001: MSTEPEGVES DSNADFAINA SSFDYGMAHT SETLADPMSF QAQDLVVNLT GVERKVFVSA RDDKDSLCNG VDFDADSDLL KNKDKKGFSK ENLKLFDSDL
101: VWAKLRSYPW WPGLVFDKSV ASKAAMRHFK KGNVLVAYFG DCTFAWNNAS QIKPFHQNFS QMQEQSNSAE FRDAIDCALD EVSRRVEFGL SCSCVSEEAY
201: NKLKTQNIIN AGIREDSSVR YGGDKLSDGI SFEPAKLVDY MKHLACFPCY DATEKLQFVI NRAQVLAFQQ WKDYSHFIDY ETFVRSVESA ATLASLPEVN
301: MDEGISAKKR KTDYKDNAEQ TKEKTLSDLT VKKRCGSRST EKLDGKSHSE KKRKVESSES GKSEKRIKKS QQKEDSVSKH SNEESLLSVG DTNKLQKTAE
401: PCHGTGVENE MNSLTPTLKP CRASKSTEVE NEKTKKPRHQ ELAERKISSP DEMLSSLHAA NTSTGIPDSI NIDPSNYEDF EKFINELFCS KLNGDSKKAS
501: ITETSEPCDK KDSAEEEILP ANKEITGSGS KEQIGLKDCS ADSLPPYALV LNFADSGSVP SEEKLNEIFK RYGPLHESKT KVTMKGKRAK VVFKRGEDAK
601: TAFSSAGKYS IFGPSLLSYR LEYVCPKRKK TT
101: VWAKLRSYPW WPGLVFDKSV ASKAAMRHFK KGNVLVAYFG DCTFAWNNAS QIKPFHQNFS QMQEQSNSAE FRDAIDCALD EVSRRVEFGL SCSCVSEEAY
201: NKLKTQNIIN AGIREDSSVR YGGDKLSDGI SFEPAKLVDY MKHLACFPCY DATEKLQFVI NRAQVLAFQQ WKDYSHFIDY ETFVRSVESA ATLASLPEVN
301: MDEGISAKKR KTDYKDNAEQ TKEKTLSDLT VKKRCGSRST EKLDGKSHSE KKRKVESSES GKSEKRIKKS QQKEDSVSKH SNEESLLSVG DTNKLQKTAE
401: PCHGTGVENE MNSLTPTLKP CRASKSTEVE NEKTKKPRHQ ELAERKISSP DEMLSSLHAA NTSTGIPDSI NIDPSNYEDF EKFINELFCS KLNGDSKKAS
501: ITETSEPCDK KDSAEEEILP ANKEITGSGS KEQIGLKDCS ADSLPPYALV LNFADSGSVP SEEKLNEIFK RYGPLHESKT KVTMKGKRAK VVFKRGEDAK
601: TAFSSAGKYS IFGPSLLSYR LEYVCPKRKK TT
Arabidopsis Description
Tudor/PWWP/MBT superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LYZ0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.