Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G060900.1 | Wheat | nucleus | 73.97 | 75.74 |
| TraesCS1A01G059700.1 | Wheat | cytosol | 43.63 | 65.32 |
| HORVU1Hr1G012320.1 | Barley | cytosol, nucleus | 35.73 | 52.93 |
| TraesCS1B01G077800.1 | Wheat | cytosol | 45.24 | 45.73 |
| Os05t0122500-00 | Rice | nucleus | 36.45 | 38.52 |
| EES18937 | Sorghum | nucleus, plastid | 34.29 | 37.75 |
| Zm00001d010984_P001 | Maize | plastid | 32.67 | 35.62 |
| CDY55692 | Canola | nucleus | 20.11 | 24.72 |
| Bra028857.1-P | Field mustard | nucleus | 19.39 | 23.48 |
| CDY04873 | Canola | nucleus | 19.39 | 23.48 |
| KRH32403 | Soybean | nucleus | 20.29 | 16.84 |
| AT5G02950.2 | Thale cress | nucleus | 18.67 | 16.46 |
| CDX73990 | Canola | nucleus | 16.7 | 16.06 |
| CDY07935 | Canola | nucleus | 15.98 | 15.75 |
| KRH19811 | Soybean | nucleus | 21.36 | 15.3 |
| TraesCS1B01G297600.1 | Wheat | nucleus | 19.57 | 14.71 |
| GSMUA_Achr10P... | Banana | nucleus | 18.67 | 14.67 |
| PGSC0003DMT400087303 | Potato | nucleus | 20.11 | 14.53 |
| GSMUA_Achr9P04320_001 | Banana | nucleus | 19.75 | 14.4 |
| VIT_08s0040g02440.t01 | Wine grape | nucleus | 21.72 | 13.63 |
| AT3G09670.1 | Thale cress | nucleus | 16.88 | 12.95 |
| Bra001301.1-P | Field mustard | nucleus | 7.54 | 12.43 |
| KRH70385 | Soybean | nucleus | 22.26 | 12.22 |
| KRH33337 | Soybean | nucleus | 22.26 | 12.17 |
| GSMUA_Achr11P... | Banana | nucleus | 15.8 | 12.05 |
| KRH34572 | Soybean | nucleus | 17.59 | 12.04 |
| Solyc04g049950.1.1 | Tomato | nucleus | 8.08 | 9.93 |
| TraesCS3B01G603600.1 | Wheat | nucleus | 24.6 | 9.03 |
| TraesCS1B01G297800.1 | Wheat | nucleus | 18.49 | 8.61 |
| TraesCS1B01G116700.1 | Wheat | plastid | 15.44 | 7.97 |
| PGSC0003DMT400027409 | Potato | nucleus | 21.18 | 7.13 |
| VIT_13s0019g03620.t01 | Wine grape | nucleus | 22.26 | 6.61 |
| KRG92228 | Soybean | nucleus | 20.11 | 6.42 |
| Solyc09g007340.2.1 | Tomato | cytosol | 20.65 | 5.43 |
| TraesCS3B01G603700.1 | Wheat | nucleus | 1.8 | 5.18 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G077900.1 | EnsemblPlantsGene:TraesCS1B01G077900 | Gene3D:2.30.30.140 | InterPro:IPR000313 | InterPro:PWWP_dom | PANTHER:PTHR42851 |
| PANTHER:PTHR42851:SF5 | PFAM:PF00855 | PFscan:PS50812 | SEG:seg | SUPFAM:SSF63748 | MapMan:35.2 |
Description
No Description!
Coordinates
chr1B:-:60963761..60965434
Molecular Weight (calculated)
59784.7 Da
IEP (calculated)
8.474
GRAVY (calculated)
-0.338
Length
557 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPATLSPEE GAVANNVGEG HGSDAGTPAR RLRSLHPDVA ELLQRTRDQR TRKKASPTAR AAKGGEVGRA RYDYVFEREE DDEAGLPAPP RLVWAKVRGY
101: HWWPAQVFDP ADASELALGE RRRRGAALVA NFWERTYAWE ADPAALRPFR EGFPRFAAVD RAHVPCWGAR KTMSPFASAV DAALGEVARR VDFGLSCDCA
201: ISRGVAKRQV VDNAGVREGA HGAVVDTAFA RDAFRGEAFV EYLSALAVAP LAGADRLELT VATAQLRAFT RWRGTRGLPM YTVCYGIRDI ADGAMGTTPA
301: RRGRASATAK RGRPRGDSAD GKWKDSRCVT CGRARESVED AMELGNYEPT PQPLSHKATT KMGKLMRRAA RRMSLSPPVT RRADRATPTP TPPVNAGVGM
401: ARCTRAAAAD HAAQLHDVPV TTAAPPPAKP QNKDEQPQLT GLLLNFTGPN AVPPATDLVE IFSRFGPVVE ARPEGFSVAV VIFESSLDAA AAFAGTAKIG
501: ALSPNLISFR LAYSLSAPAA QVDDSPQSPM NADEMDHLLD EAEGMDLLDL LAVEALH
101: HWWPAQVFDP ADASELALGE RRRRGAALVA NFWERTYAWE ADPAALRPFR EGFPRFAAVD RAHVPCWGAR KTMSPFASAV DAALGEVARR VDFGLSCDCA
201: ISRGVAKRQV VDNAGVREGA HGAVVDTAFA RDAFRGEAFV EYLSALAVAP LAGADRLELT VATAQLRAFT RWRGTRGLPM YTVCYGIRDI ADGAMGTTPA
301: RRGRASATAK RGRPRGDSAD GKWKDSRCVT CGRARESVED AMELGNYEPT PQPLSHKATT KMGKLMRRAA RRMSLSPPVT RRADRATPTP TPPVNAGVGM
401: ARCTRAAAAD HAAQLHDVPV TTAAPPPAKP QNKDEQPQLT GLLLNFTGPN AVPPATDLVE IFSRFGPVVE ARPEGFSVAV VIFESSLDAA AAFAGTAKIG
501: ALSPNLISFR LAYSLSAPAA QVDDSPQSPM NADEMDHLLD EAEGMDLLDL LAVEALH
001: MSTESERIES VSEANASSLE VGNDQMSEAL AGQAQELKTI GDDKEGCGNF ASAGDNGMEK VNGFTNLVKE TESVNGELDL GTRTENVGGE SNQSDKKVLV
101: DSEEVMMVEK RGLLVEKEVE PDMVCSHGAD LSDVKVSDGR LDSEDLVQDR KPDGLEKQGT KVEDLDVVCF MGLEPHESKD ESILDDEIAH VAAKVKISDS
201: DLVWAKVRSH PWWPGQVFDA SAATDKAKKH FKKGSFLVTY FGDCTFAWNE ASRIKPFRQH FSQMAKQSSL PDFIDAIDFA LEEVSRRIEF GLACSCISEE
301: VYQKIKTQNV INPGIREDSS SIHGGDKVSS AVFFEPANLV GYVKRLACSP SYDATDALQL VSQRAQLLAF NRWKGYTDLP EFMTLQGSVE SAPKISPAEE
401: QSSLVEVSDP EPTKSKQVYT KRRKTNLQTE QSSLVEVSDP DKGDCKHDGV FEYEETIVPK KKEKTLAEFI AEKRVSRHNG NTSHEKSGNV PHCEKKRKVV
501: QSKVPKSTKK IKANLQTEDP GSPVSPKNDR KNNLSAGDKI TPQKARKSFG IGASILKVAN QMHCSTPTRL LPCSDSTSKK AAKSNGSGKS LQEKPKAEAL
601: SAREISPSTT LSSPHAASVT KTTSGKSNSV SLDHNLSGEL DQVRKEAPST NLVEDPMLES RDLKDSSKEQ VVHEDKKEAA NVADEKSIMD SNLTGEKISG
701: LDLREQPSNK NCSGGSDSCK EDVSAE
101: DSEEVMMVEK RGLLVEKEVE PDMVCSHGAD LSDVKVSDGR LDSEDLVQDR KPDGLEKQGT KVEDLDVVCF MGLEPHESKD ESILDDEIAH VAAKVKISDS
201: DLVWAKVRSH PWWPGQVFDA SAATDKAKKH FKKGSFLVTY FGDCTFAWNE ASRIKPFRQH FSQMAKQSSL PDFIDAIDFA LEEVSRRIEF GLACSCISEE
301: VYQKIKTQNV INPGIREDSS SIHGGDKVSS AVFFEPANLV GYVKRLACSP SYDATDALQL VSQRAQLLAF NRWKGYTDLP EFMTLQGSVE SAPKISPAEE
401: QSSLVEVSDP EPTKSKQVYT KRRKTNLQTE QSSLVEVSDP DKGDCKHDGV FEYEETIVPK KKEKTLAEFI AEKRVSRHNG NTSHEKSGNV PHCEKKRKVV
501: QSKVPKSTKK IKANLQTEDP GSPVSPKNDR KNNLSAGDKI TPQKARKSFG IGASILKVAN QMHCSTPTRL LPCSDSTSKK AAKSNGSGKS LQEKPKAEAL
601: SAREISPSTT LSSPHAASVT KTTSGKSNSV SLDHNLSGEL DQVRKEAPST NLVEDPMLES RDLKDSSKEQ VVHEDKKEAA NVADEKSIMD SNLTGEKISG
701: LDLREQPSNK NCSGGSDSCK EDVSAE
Arabidopsis Description
Tudor/PWWP/MBT superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SF36]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.