Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G288400.1 | Wheat | nucleus | 64.09 | 64.3 |
| TraesCS1B01G297800.1 | Wheat | nucleus | 59.6 | 59.95 |
| HORVU1Hr1G071590.1 | Barley | nucleus | 55.03 | 51.88 |
| Os05t0463500-01 | Rice | nucleus | 17.79 | 46.62 |
| TraesCS1D01G287200.1 | Wheat | nucleus | 23.69 | 37.55 |
| Zm00001d038396_P003 | Maize | nucleus | 38.32 | 34.15 |
| OQU78150 | Sorghum | nucleus | 39.15 | 34.01 |
| CDY04873 | Canola | nucleus | 10.64 | 27.83 |
| Bra028857.1-P | Field mustard | nucleus | 10.56 | 27.61 |
| CDY55692 | Canola | nucleus | 10.14 | 26.93 |
| GSMUA_Achr8P02720_001 | Banana | nucleus | 18.7 | 26.75 |
| KRH32403 | Soybean | nucleus | 14.38 | 25.78 |
| Zm00001d010556_P002 | Maize | nucleus | 37.82 | 24.52 |
| AT5G02950.2 | Thale cress | nucleus | 12.55 | 23.89 |
| Solyc04g049950.1.1 | Tomato | nucleus | 8.73 | 23.18 |
| KRH19811 | Soybean | nucleus | 14.96 | 23.14 |
| CDY07935 | Canola | nucleus | 10.72 | 22.83 |
| TraesCS1D01G060900.1 | Wheat | nucleus | 9.98 | 22.06 |
| PGSC0003DMT400087303 | Potato | nucleus | 13.88 | 21.66 |
| VIT_08s0040g02440.t01 | Wine grape | nucleus | 15.79 | 21.4 |
| CDX73990 | Canola | nucleus | 10.06 | 20.9 |
| TraesCS1D01G060800.1 | Wheat | cytosol | 9.48 | 20.88 |
| KRH34572 | Soybean | nucleus | 14.05 | 20.76 |
| KRH70385 | Soybean | nucleus | 17.46 | 20.69 |
| KRH33337 | Soybean | nucleus | 17.12 | 20.22 |
| AT3G09670.1 | Thale cress | nucleus | 10.39 | 17.22 |
| GSMUA_Achr5P29300_001 | Banana | nucleus | 21.86 | 16.62 |
| Bra001301.1-P | Field mustard | nucleus | 4.24 | 15.09 |
| PGSC0003DMT400027409 | Potato | nucleus | 16.21 | 11.78 |
| TraesCS1D01G097400.1 | Wheat | plastid | 9.73 | 11.23 |
| KRG92228 | Soybean | nucleus | 15.54 | 10.72 |
| VIT_13s0019g03620.t01 | Wine grape | nucleus | 16.63 | 10.66 |
| Solyc09g007340.2.1 | Tomato | cytosol | 16.13 | 9.16 |
| TraesCS3D01G543800.1 | Wheat | nucleus | 10.64 | 8.37 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G287400.1 | EnsemblPlantsGene:TraesCS1D01G287400 | Gene3D:2.30.30.140 | InterPro:IPR000313 | InterPro:PWWP_dom | PANTHER:PTHR42851 |
| PANTHER:PTHR42851:SF4 | PFAM:PF00855 | PFscan:PS50812 | SEG:seg | SMART:SM00293 | SUPFAM:SSF63748 |
| TIGR:cd05162 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr1D:+:385803197..385806997
Molecular Weight (calculated)
128140.0 Da
IEP (calculated)
4.449
GRAVY (calculated)
-0.539
Length
1203 amino acids
Sequence
(BLAST)
(BLAST)
0001: MGSSPAAVAS PDPGPDGVPK QDSAAAAGDS DVTMAEASEE VAAAAEVKEE GAARDAALAA GAGRDAPDAG LEEADAAAAA AVDPLYATEA AGMVVAEGCV
0101: DGDSINGLGL GSGSSDNKAG AFTGEPDWEL VTAADVAGAS ATSEQAEAES GELGGEYHLN ATPVAGNEGQ DNGVAHFEEE IQNGLAISAQ CARYSLPPLD
0201: KEGFRVSDLV WGKVKGHPWW PGEIFDPSNA SELALKHQKK DSHLVAYFGD NTFAWCDESQ LKPFVTDYSQ MEKQSSLDSF VGSVNYALEE LSRRILSGMS
0301: CACLPEELSD SGMSYMVENA GLKDGVTCST VNRSEILASF SPESLLRYVR SLALFPGQGG DLLELVIACS QLTSFYRSKG CPELASFQTG SAWVEDDTDT
0401: SPIEDVVVEE VVVSEVPPPE VKPKRGRGRP RKHKPEDKLE LPGKQKPAVA AERQMIKDFD DKKRSLDSFE DLDAKSPTGG SFKIGECIRR AASQLTGPSP
0501: IAKSQNENTA EAENAEFDVS SDDAANELTV EKCAKRRRLH SHHLADPKEL FSQLCSVAIE PTDGYNFSAL TISYFSDFRN YVVSVATEAS IIEKSTTKRR
0601: RKKRVLPSPE LETTDHMQDS YWSGLSLLNH PIHSLKRAST NTRPRRRRKS SHETDLSSVQ DQQMAPKKEI QVAPKKQIQV AAKKQIQVIE RSIIHVDEKI
0701: VDEWKPTALV LSFGRSTDLL SETDLIKKFG RYGPLKESET EVQRSTNTIK IVFKKRADAE KAFSAAGKYG TVGPSLRSFR LVNMPFSLGE SEPNKSEACP
0801: GDHGPKLPGP SEPKVSLDAV KDNQVNKTEK AEVVQPSSGE QVETVKKTCQ AEPVKQSSGA QVETVQQACQ PEADAVKKAR KIAAELTGPS DQIATADVTE
0901: QTTENQAPKD AVEIPCDVKL EDEALTEESV DQVVTEQVKV PSDAVPDTSK VQPETPVKHV GTAAEADTAK DLTEVSVQEA GLKKQTVEPK TAEIEPEQVS
1001: CPEQTVQVED VIDASGGHTN VDRKTAEEIT MTVVFEGAVE SEAVAPVEET VENKATAGTL GEAPGDEMEN RDAAESLGGE VGVGEATGDS PDERVAVEAL
1101: AGMSTQGETT AEAADAEITT TGKTAEGVGV QTRGKKATTA KKPVESATAE APGKKATTSK KPVEDATVEA RDEKAATAKK KTEGATVEVP DEKAMTAEED
1201: AMA
0101: DGDSINGLGL GSGSSDNKAG AFTGEPDWEL VTAADVAGAS ATSEQAEAES GELGGEYHLN ATPVAGNEGQ DNGVAHFEEE IQNGLAISAQ CARYSLPPLD
0201: KEGFRVSDLV WGKVKGHPWW PGEIFDPSNA SELALKHQKK DSHLVAYFGD NTFAWCDESQ LKPFVTDYSQ MEKQSSLDSF VGSVNYALEE LSRRILSGMS
0301: CACLPEELSD SGMSYMVENA GLKDGVTCST VNRSEILASF SPESLLRYVR SLALFPGQGG DLLELVIACS QLTSFYRSKG CPELASFQTG SAWVEDDTDT
0401: SPIEDVVVEE VVVSEVPPPE VKPKRGRGRP RKHKPEDKLE LPGKQKPAVA AERQMIKDFD DKKRSLDSFE DLDAKSPTGG SFKIGECIRR AASQLTGPSP
0501: IAKSQNENTA EAENAEFDVS SDDAANELTV EKCAKRRRLH SHHLADPKEL FSQLCSVAIE PTDGYNFSAL TISYFSDFRN YVVSVATEAS IIEKSTTKRR
0601: RKKRVLPSPE LETTDHMQDS YWSGLSLLNH PIHSLKRAST NTRPRRRRKS SHETDLSSVQ DQQMAPKKEI QVAPKKQIQV AAKKQIQVIE RSIIHVDEKI
0701: VDEWKPTALV LSFGRSTDLL SETDLIKKFG RYGPLKESET EVQRSTNTIK IVFKKRADAE KAFSAAGKYG TVGPSLRSFR LVNMPFSLGE SEPNKSEACP
0801: GDHGPKLPGP SEPKVSLDAV KDNQVNKTEK AEVVQPSSGE QVETVKKTCQ AEPVKQSSGA QVETVQQACQ PEADAVKKAR KIAAELTGPS DQIATADVTE
0901: QTTENQAPKD AVEIPCDVKL EDEALTEESV DQVVTEQVKV PSDAVPDTSK VQPETPVKHV GTAAEADTAK DLTEVSVQEA GLKKQTVEPK TAEIEPEQVS
1001: CPEQTVQVED VIDASGGHTN VDRKTAEEIT MTVVFEGAVE SEAVAPVEET VENKATAGTL GEAPGDEMEN RDAAESLGGE VGVGEATGDS PDERVAVEAL
1101: AGMSTQGETT AEAADAEITT TGKTAEGVGV QTRGKKATTA KKPVESATAE APGKKATTSK KPVEDATVEA RDEKAATAKK KTEGATVEVP DEKAMTAEED
1201: AMA
001: MSTESERIES VSEANASSLE VGNDQMSEAL AGQAQELKTI GDDKEGCGNF ASAGDNGMEK VNGFTNLVKE TESVNGELDL GTRTENVGGE SNQSDKKVLV
101: DSEEVMMVEK RGLLVEKEVE PDMVCSHGAD LSDVKVSDGR LDSEDLVQDR KPDGLEKQGT KVEDLDVVCF MGLEPHESKD ESILDDEIAH VAAKVKISDS
201: DLVWAKVRSH PWWPGQVFDA SAATDKAKKH FKKGSFLVTY FGDCTFAWNE ASRIKPFRQH FSQMAKQSSL PDFIDAIDFA LEEVSRRIEF GLACSCISEE
301: VYQKIKTQNV INPGIREDSS SIHGGDKVSS AVFFEPANLV GYVKRLACSP SYDATDALQL VSQRAQLLAF NRWKGYTDLP EFMTLQGSVE SAPKISPAEE
401: QSSLVEVSDP EPTKSKQVYT KRRKTNLQTE QSSLVEVSDP DKGDCKHDGV FEYEETIVPK KKEKTLAEFI AEKRVSRHNG NTSHEKSGNV PHCEKKRKVV
501: QSKVPKSTKK IKANLQTEDP GSPVSPKNDR KNNLSAGDKI TPQKARKSFG IGASILKVAN QMHCSTPTRL LPCSDSTSKK AAKSNGSGKS LQEKPKAEAL
601: SAREISPSTT LSSPHAASVT KTTSGKSNSV SLDHNLSGEL DQVRKEAPST NLVEDPMLES RDLKDSSKEQ VVHEDKKEAA NVADEKSIMD SNLTGEKISG
701: LDLREQPSNK NCSGGSDSCK EDVSAE
101: DSEEVMMVEK RGLLVEKEVE PDMVCSHGAD LSDVKVSDGR LDSEDLVQDR KPDGLEKQGT KVEDLDVVCF MGLEPHESKD ESILDDEIAH VAAKVKISDS
201: DLVWAKVRSH PWWPGQVFDA SAATDKAKKH FKKGSFLVTY FGDCTFAWNE ASRIKPFRQH FSQMAKQSSL PDFIDAIDFA LEEVSRRIEF GLACSCISEE
301: VYQKIKTQNV INPGIREDSS SIHGGDKVSS AVFFEPANLV GYVKRLACSP SYDATDALQL VSQRAQLLAF NRWKGYTDLP EFMTLQGSVE SAPKISPAEE
401: QSSLVEVSDP EPTKSKQVYT KRRKTNLQTE QSSLVEVSDP DKGDCKHDGV FEYEETIVPK KKEKTLAEFI AEKRVSRHNG NTSHEKSGNV PHCEKKRKVV
501: QSKVPKSTKK IKANLQTEDP GSPVSPKNDR KNNLSAGDKI TPQKARKSFG IGASILKVAN QMHCSTPTRL LPCSDSTSKK AAKSNGSGKS LQEKPKAEAL
601: SAREISPSTT LSSPHAASVT KTTSGKSNSV SLDHNLSGEL DQVRKEAPST NLVEDPMLES RDLKDSSKEQ VVHEDKKEAA NVADEKSIMD SNLTGEKISG
701: LDLREQPSNK NCSGGSDSCK EDVSAE
Arabidopsis Description
Tudor/PWWP/MBT superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SF36]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.