Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g071490.1.1 | Tomato | nucleus | 86.99 | 87.75 |
| CDY39560 | Canola | nucleus | 13.36 | 18.15 |
| Bra018079.1-P | Field mustard | nucleus | 13.8 | 17.69 |
| CDY48152 | Canola | nucleus | 13.1 | 16.85 |
| AT3G48187.1 | Thale cress | nucleus | 12.23 | 16.55 |
| KRH17636 | Soybean | nucleus | 8.47 | 13.0 |
| KRG90051 | Soybean | nucleus | 7.25 | 10.78 |
| PGSC0003DMT400001285 | Potato | nucleus | 6.9 | 9.48 |
| PGSC0003DMT400087303 | Potato | nucleus | 5.24 | 7.78 |
| PGSC0003DMT400058347 | Potato | cytosol | 4.19 | 7.26 |
| VIT_17s0000g08510.t01 | Wine grape | nucleus | 6.2 | 5.74 |
| PGSC0003DMT400063506 | Potato | nucleus | 2.88 | 5.15 |
| PGSC0003DMT400027409 | Potato | nucleus | 6.99 | 4.83 |
| PGSC0003DMT400063505 | Potato | nucleus | 1.31 | 3.99 |
| TraesCS3A01G538200.1 | Wheat | nucleus | 2.18 | 1.6 |
Protein Annotations
| EntrezGene:102593470 | Gene3D:2.30.30.140 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR000313 | UniProt:M1CKG0 | PFAM:PF00855 | EnsemblPlantsGene:PGSC0003DMG400026995 | PGSC:PGSC0003DMG400026995 | EnsemblPlants:PGSC0003DMT400069444 |
| PFscan:PS50812 | PANTHER:PTHR10688 | PANTHER:PTHR10688:SF3 | InterPro:PWWP_dom | InterPro:RBD_domain_sf | SMART:SM00293 |
| SUPFAM:SSF54928 | SUPFAM:SSF63748 | UniParc:UPI0002948FE8 | RefSeq:XP_006347453.1 | SEG:seg | : |
Description
ATM (ATAXIA-TELANGIECTASIA MUTATED) [Source:PGSC_GENE;Acc:PGSC0003DMG400026995]
Coordinates
chr6:-:52340043..52344326
Molecular Weight (calculated)
124032.0 Da
IEP (calculated)
4.694
GRAVY (calculated)
-0.576
Length
1145 amino acids
Sequence
(BLAST)
(BLAST)
0001: METQKISETL VEGSVDYKPV LSQTPDGKTL EKVSVVSSLS ESGPVSELVT VTEVPSGVGN ANVHKNIANV VDGTELELMG VGFEQKLVDG YDNIDSEVKS
0101: EERVVDGYDN FDSEGVKSDE KLANVDYNNG LEGVDTEQKL VDGQGTVESE NKLANVDDYN DLEGVEIENK FGDVDDTIDL EALGLENEDV SLDGLMEGGT
0201: LKHETQESGA EFNESLDNGV EKIGVADAVE DIDTSKVHVN DSPTKIEVSG DGISLTVDVF GPDSTFYMET DNPMGVNGNE AEGNVSDNQE HNFAVGDLVW
0301: VKMKTDLWWP GMICDPHTTK DDGKCNHKDG FFVKHFGNTS SVWCRPFQLK PFIEYFELMS RQNKSRSFYA AIEKALGEFG RRVKQEMTCS CFSKENQVAA
0401: QNFPSKEDEN GGSVFSASQF EPSNLLEFIK SRALGLRSPG NVEFTVAENC LSAFYTSIGH KQLPLYKLRP TNNLISVSKD EDLDKLSSGD SVLKSCRSGS
0501: DDIKMTEMEL SGSLESPRGM RSMISRSQIA NEHAGGKSEK GFESRERKKS KYLSYPYVNS WASRKNSLGQ GEDETEDCEE VTPGGVKSSS NPSMVSTPIG
0601: NSSNKTSLRK SRKSVSDNDI CNNADFGAAS AAEMLQELHQ TALDCFFPIQ STCSVPIRDF YLSFRAFRGP EVQMDEYKEA TLGCQETFQS DNILASGGYD
0701: LQVEGQPPPN VLPKKRGRKK SDGINATGPK FSSKTNLPRM TADGTSMNGS PLNDSVQTGP DTFKKGVVHR QRKKAAIAAV VHNEIGVLGG LPDLNVNNAG
0801: LSVENMQVIG PAPTQGKLEP KRRRRKKEEL GSENLPDVSK GNTQFIPMLK SVEVTGSLPL EGGPQPDNMF GVQGASSLPN AELLANEIHA AGSSLPNISQ
0901: ITGLVSSAKA EGKKRKRKEK ALNIQNNSSA LPDLNGQVTD PNLKGKEVTE MSCVSGQAKP KQKRRRATKS AAIGIPNPNG DHNTLLLYFT PGSPVPSKEY
1001: ITATFASFGP LEESKTLYLN DSTAQVVFEK ESDAMEALQS LQSRNPFGPS LVSYRLRHVS TSNNTQTSHP SLPADALQSP AVLSGAVPSN GEGPDLVVIK
1101: QNLESMTTML EKAGDNISPE MKAKLESEVK GFLEKVSNMV GSSSS
0101: EERVVDGYDN FDSEGVKSDE KLANVDYNNG LEGVDTEQKL VDGQGTVESE NKLANVDDYN DLEGVEIENK FGDVDDTIDL EALGLENEDV SLDGLMEGGT
0201: LKHETQESGA EFNESLDNGV EKIGVADAVE DIDTSKVHVN DSPTKIEVSG DGISLTVDVF GPDSTFYMET DNPMGVNGNE AEGNVSDNQE HNFAVGDLVW
0301: VKMKTDLWWP GMICDPHTTK DDGKCNHKDG FFVKHFGNTS SVWCRPFQLK PFIEYFELMS RQNKSRSFYA AIEKALGEFG RRVKQEMTCS CFSKENQVAA
0401: QNFPSKEDEN GGSVFSASQF EPSNLLEFIK SRALGLRSPG NVEFTVAENC LSAFYTSIGH KQLPLYKLRP TNNLISVSKD EDLDKLSSGD SVLKSCRSGS
0501: DDIKMTEMEL SGSLESPRGM RSMISRSQIA NEHAGGKSEK GFESRERKKS KYLSYPYVNS WASRKNSLGQ GEDETEDCEE VTPGGVKSSS NPSMVSTPIG
0601: NSSNKTSLRK SRKSVSDNDI CNNADFGAAS AAEMLQELHQ TALDCFFPIQ STCSVPIRDF YLSFRAFRGP EVQMDEYKEA TLGCQETFQS DNILASGGYD
0701: LQVEGQPPPN VLPKKRGRKK SDGINATGPK FSSKTNLPRM TADGTSMNGS PLNDSVQTGP DTFKKGVVHR QRKKAAIAAV VHNEIGVLGG LPDLNVNNAG
0801: LSVENMQVIG PAPTQGKLEP KRRRRKKEEL GSENLPDVSK GNTQFIPMLK SVEVTGSLPL EGGPQPDNMF GVQGASSLPN AELLANEIHA AGSSLPNISQ
0901: ITGLVSSAKA EGKKRKRKEK ALNIQNNSSA LPDLNGQVTD PNLKGKEVTE MSCVSGQAKP KQKRRRATKS AAIGIPNPNG DHNTLLLYFT PGSPVPSKEY
1001: ITATFASFGP LEESKTLYLN DSTAQVVFEK ESDAMEALQS LQSRNPFGPS LVSYRLRHVS TSNNTQTSHP SLPADALQSP AVLSGAVPSN GEGPDLVVIK
1101: QNLESMTTML EKAGDNISPE MKAKLESEVK GFLEKVSNMV GSSSS
001: MKLQNPDKKT LREGFSQESS VVALDSGVLA MSGLKCDGKF PVKDVLMEEG GDKVRKIQVS GGNISLVVDF SGARTSSNNF FESNASCVNE NLVKGNGYRE
101: DETQEFLVGN LVWVMTKYKK WWPGEVVDFK ADAKESFMVR SIGQSHLVSW FASSKLKPFK ESFEQVLNQR NDNGFFDALQ KAMSLLSNSL KLDMTCSCIA
201: DGNGIVSAQN ITTRKNKPLI LREFSVDRLE PKEFVTQLKN IAKCVLNAGV LESTVMQSQL SAFYTLFGHK QIPMAQLHEN EGRKSFTAKM SDSKFIGSPS
301: ICAGNSRKRF RKEWFRKFVS EVDNVSARDD LVNVPPSDLI SKLKLLAVGY NCSEETENIG LFEWFFSKFR ISVYHDENAY KMQLANMAGF KDLMLATNAN
401: RGTVQKTLKS KKIGKSKMEP LNGVSVADTE QKTFELQISK KSNIESLNGV SVADTEQKTF ELQILEKSNI ESLNGVSTPN IDHEASKSNN SGKTKINHII
501: GHSNFPSSVA KVQLAKDFQD KLLVQAPDRK AMTADTLSRP AAILVPDLNS GGNALGTAEF DHMQRPETLI QHNVCPQEEK TPRSTILNFQ VTAHQGVSGT
601: QFVSSQPTSY KHFTSADLFT YSGKKKRGRK RKNAEELPIV AHASATTGIP DLNGTNTEPT LVLPQVEPTQ RRRRRKKEES PNGLTRGITI LFLKFSSQVS
701: MPSRDDLTST FSAFGPLDSS ETHVSEEFSG AQVAFVSSAD AIEAVKSLEK ANPFGETLVN FRLQQKLITV QRNIAPRMPV ISHVSPVPKP NNIPTSMDAM
801: RQNLLMMTAM LEKSGDSLSR ETKAKLKSEI TGLLEKVSSI PSSSSS
101: DETQEFLVGN LVWVMTKYKK WWPGEVVDFK ADAKESFMVR SIGQSHLVSW FASSKLKPFK ESFEQVLNQR NDNGFFDALQ KAMSLLSNSL KLDMTCSCIA
201: DGNGIVSAQN ITTRKNKPLI LREFSVDRLE PKEFVTQLKN IAKCVLNAGV LESTVMQSQL SAFYTLFGHK QIPMAQLHEN EGRKSFTAKM SDSKFIGSPS
301: ICAGNSRKRF RKEWFRKFVS EVDNVSARDD LVNVPPSDLI SKLKLLAVGY NCSEETENIG LFEWFFSKFR ISVYHDENAY KMQLANMAGF KDLMLATNAN
401: RGTVQKTLKS KKIGKSKMEP LNGVSVADTE QKTFELQISK KSNIESLNGV SVADTEQKTF ELQILEKSNI ESLNGVSTPN IDHEASKSNN SGKTKINHII
501: GHSNFPSSVA KVQLAKDFQD KLLVQAPDRK AMTADTLSRP AAILVPDLNS GGNALGTAEF DHMQRPETLI QHNVCPQEEK TPRSTILNFQ VTAHQGVSGT
601: QFVSSQPTSY KHFTSADLFT YSGKKKRGRK RKNAEELPIV AHASATTGIP DLNGTNTEPT LVLPQVEPTQ RRRRRKKEES PNGLTRGITI LFLKFSSQVS
701: MPSRDDLTST FSAFGPLDSS ETHVSEEFSG AQVAFVSSAD AIEAVKSLEK ANPFGETLVN FRLQQKLITV QRNIAPRMPV ISHVSPVPKP NNIPTSMDAM
801: RQNLLMMTAM LEKSGDSLSR ETKAKLKSEI TGLLEKVSSI PSSSSS
Arabidopsis Description
Serine/Threonine-kinase ATM [Source:UniProtKB/TrEMBL;Acc:A0A1I9LTU3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.