Factsheet for PGSC0003DMT400063505

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g099360.2.1	Tomato	nucleus	78.19	29.2
Os05t0149200-01	Rice	plastid	21.54	21.66
CDX99976	Canola	nucleus	35.11	14.1
GSMUA_Achr8P06730_001	Banana	nucleus	36.7	13.57
CDY19729	Canola	nucleus	36.44	13.35
Bra036620.1-P	Field mustard	nucleus	36.17	13.2
AT3G05430.1	Thale cress	nucleus	33.78	13.16
PGSC0003DMT400058347	Potato	cytosol	22.87	13.01
GSMUA_Achr3P23960_001	Banana	nucleus	35.37	12.98
AT5G27650.1	Thale cress	nucleus	35.64	12.5
KRG92886	Soybean	nucleus	33.51	11.93
KRG96822	Soybean	nucleus	34.04	11.91
KRH33902	Soybean	nucleus	32.98	11.87
VIT_14s0060g02400.t01	Wine grape	nucleus	38.3	11.51
Zm00001d024841_P001	Maize	nucleus	25.27	11.18
OQU77406	Sorghum	nucleus	26.06	9.53
Zm00001d010869_P001	Maize	nucleus	24.73	9.44
TraesCS1A01G089100.1	Wheat	plastid	26.06	9.03
TraesCS1D01G097400.1	Wheat	plastid	24.47	8.83
TraesCS1B01G116700.1	Wheat	plastid	24.73	8.62
HORVU1Hr1G020500.2	Barley	nucleus, plastid	24.73	8.54
PGSC0003DMT400001285	Potato	nucleus	18.35	8.28
PGSC0003DMT400087303	Potato	nucleus	15.96	7.78
PGSC0003DMT400063506	Potato	nucleus	10.11	5.93
PGSC0003DMT400027409	Potato	nucleus	17.29	3.93
PGSC0003DMT400069444	Potato	nucleus	3.99	1.31

Protein Annotations

EnsemblPlants:PGSC0003DMT400063505	EnsemblPlantsGene:PGSC0003DMG401024702	Gene3D:2.30.30.140	InterPro:IPR000313	InterPro:PWWP_dom	PANTHER:PTHR10688
PANTHER:PTHR10688:SF1	PFAM:PF00855	PFscan:PS50812	PGSC:PGSC0003DMG401024702	SMART:SM00293	SUPFAM:SSF63748
UniParc:UPI000296890D	UniProt:M1CAR9	MapMan:35.2	:	:	:

Description

Gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG401024702]

Coordinates

chr1:+:77173336..77174694

Molecular Weight (calculated)

42501.9 Da

IEP (calculated)

8.635

GRAVY (calculated)

-0.664

Length

376 amino acids

Sequence
(BLAST)

001: MISVMSNRFE ANRSNDSVEE TQVRVSSRTP ADDSEQARVS MDVTDSSASN SQTEDSRVLE LESEGNQIRV KERKNQEGGS SGKSGRVKLD QKGKTALVSS
101: KTDVRKGKME PYVSEYDLML SKFDEFAGNV KCWSVGYGFE MGDMVWGKVK SHPWWPGHIF SEAFATPSVR RSKREGHILV AFYGDSSYGW FDPDELVHFE
201: PTYAEKSMQT NVKNFIKAVE EGVDEVSRRS ALGLVCYCRK TYRLRAVSIN GFFAVDFSDL ERNCTYSASQ IKKARESFKP KETRDFVSKL ALKPRRKVHE
301: DLNLVKKKAT ALAYRKAVFE EDDPTYAEAF GVVPSKQTQE VAQPYRQPSS RGIGIDAILQ CRLRPSTLVH YSFGED

Best Arabidopsis Sequence Match ( AT5G27650.1 )
(BLAST)

0001: MYKTKLIPVM NEDAVIVQQT DSIQDPKVTP DDTVVDSSGD VHEAIDDDVE ASSPMELDSA VTNDARVLES ERSEKDGVVG SEEEDEIKSE DVLIDKDDES
0101: SEVKEEEEEE DGSDDQSSEL GSEADEKELD LGLKEEKKGV SDYKSLLSEF DDYVASEKMG SGVSRALSYG FEVGDLVWGK VKSHPWWPGH IFNEAFASPS
0201: VRRMRRIDHV LVAFFGDSSY GWFDPAELIP FEPNLEEKSQ QTVSKHFVRA VEEAKDEASR RSALGLTCKC RNPYNFRPSN VEDYFAVDVP DYELQAVYSV
0301: DQIKNSRDKF LPAETISFVK QLALAPQECD PDSLKFMKKK AVVFAFRKSV FEEFDETYAQ AFGTKSPRSS VSTLEPHNRA PPRAPLSGPL VIAETLGDLK
0401: SSKKPTKVKV SKKKDKYLLK RRDEAGDKSV QFGEIEASSE ASHIQGIDGS LDGDFGLQRR APTLQTPMKD EKSGIVSMDF ASSNTAIPGK EFSASKPSLD
0501: EEKGLAEKSK ERMEERAAVL PEHGKSEAMA SLKPKEEAGT DLGSAGSSLQ PLLESHTSAS EGKSSTGSVI KKVKVAKRSS SEMSSENPPS EPKKKKKKKK
0601: EPDSDHPVKR KNLYSGEAGA KKLSQLGSAH LQTYMEADVP QLLSHLQDLS LDPFHGLSVA SFGTARKFFL RFRSLNYQKS LSVSSSDATV ENARDTKPSK
0701: PVKTVKRTED PSKAGKKRLS SDRQDEIPSA KKLKKTNQLK SMASEKKIIR EAKDSIKPIR EPSRVVQAKP ARGQTGKKTA PSVKVVEPTM LVMKFPPGTS
0801: LPSAALLKAR FGRFGLLDQS AIRVFWKSST CRVVFLYKAD AQTAFRYATG NNTLFGNVNV KYFLRDVDAP KAEPREPENT KEDDEPQSQW LDQAPPLHQP
0901: TLPPPNVNLK SCLKKPVDDP SSSSNNGNGN RAAVRVKFML GGEENSSKAN TEPPQVTMTL NRNSGPSSSS SSVPMEFVSK KFQNVVHHQQ LPPSTLPPIL
1001: PLPPQYTKPQ QLPIKPVDHV EPPMPPSRNF RGPIPAVSAG DISHQMLNLL SKCNEVVANV TGLLGYVPYH PL

Arabidopsis Description

Tudor/PWWP/MBT superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K4D6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.