Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX67453 | Canola | cytosol, nucleus, plastid | 29.7 | 93.62 |
| CDY11682 | Canola | cytosol, nucleus, plastid | 24.86 | 86.67 |
| AT5G40340.1 | Thale cress | nucleus | 46.57 | 41.07 |
| Bra025306.1-P | Field mustard | nucleus | 16.99 | 28.54 |
| Bra028857.1-P | Field mustard | nucleus | 12.71 | 24.57 |
| KRH56588 | Soybean | nucleus | 19.24 | 23.95 |
| KRG94143 | Soybean | nucleus | 23.96 | 22.98 |
| KRH07190 | Soybean | nucleus | 23.73 | 22.52 |
| PGSC0003DMT400001285 | Potato | nucleus | 20.25 | 21.61 |
| VIT_14s0066g01120.t01 | Wine grape | nucleus | 23.51 | 21.48 |
| Solyc02g086750.1.1 | Tomato | nucleus | 20.14 | 21.44 |
| KRG93266 | Soybean | nucleus | 20.81 | 16.86 |
| Bra001301.1-P | Field mustard | nucleus | 5.74 | 15.09 |
| Bra036620.1-P | Field mustard | nucleus | 13.16 | 11.36 |
| Bra018079.1-P | Field mustard | nucleus | 7.76 | 7.73 |
Protein Annotations
| EnsemblPlants:Bra028455.1 | EnsemblPlants:Bra028455.1-P | EnsemblPlantsGene:Bra028455 | Gene3D:2.30.30.140 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005730 | GO:GO:0009506 | InterPro:IPR000313 | InterPro:PWWP_dom |
| ncoils:Coil | PANTHER:PTHR10688 | PANTHER:PTHR10688:SF3 | PFAM:PF00855 | PFscan:PS50812 | SEG:seg |
| SMART:SM00293 | SUPFAM:SSF63748 | UniParc:UPI00025432B9 | UniProt:M4EI40 | MapMan:35.2 | : |
Description
AT5G40340 (E=4e-102) | PWWP domain-containing protein
Coordinates
chrA02:-:422425..425094
Molecular Weight (calculated)
99795.1 Da
IEP (calculated)
4.949
GRAVY (calculated)
-1.061
Length
889 amino acids
Sequence
(BLAST)
(BLAST)
001: MEMETVEETR PRASSSETGS AKQNDVAASG EKTLKENGVR VTENGEHKVV DESGVIEDCV MNGVSSLLKL KQDVSDNSEA KEEEEEEEHG YHVGDFVWGK
101: IKNHPWWPGQ IYDPSEASDL ALKIKQKGKM LVAYFGDGTF AWCGPSQLKP FAESFKECSN VSSSRVIVTA VEEAVEEMGR HMERLLIRDC TVELDNRVVK
201: NAGIKEGVAV RDVRREMISS LLVGKPEGIL QDVKGFAETV SFSGLLELEI VKRKVSAFFR SKRGYGLTEF PEPQPVPGLE DKNNDDDDDD EDEDFDDGGA
301: RRSTIEKGKE EEALDPEESI QRPLEKCSGF PDHRLQHRRK QKSIAEILEN ESCAKVRFEI EPEDGKGKSS RKKVKRSDEL VTTTNPKSRR MKEVAAIEED
401: SKGKRKRKKR DEEGGGEREE DEADNDSTPL ASLRKRAKVD DASSAGNGET STQNTTKRER KKSSKYFSPE FLSDFSSKGR KKTKPEPESS EVPSQSQGGE
501: LMANASNSLV VVEEEDNNSG ELLLLENGAG HQELSEELSN AVDFLRLGAT TEEIRDLIRV SALGTEYPKD SSSRDMVREF MSIYRSFTYH EGVNSKFLGS
601: YSTAGTEKEE MNGTGKPEEI EQTGKEENET TKKQRKPKTP TSKKQADEVE ESRKEVTETT KKERKRNKPE SEKKAHEGEE STKKERKAKK LKSRKQGDEE
701: EEASGSMKKD KKGKKPKFEE QETLNESEKK EREGKTKKQE FSGAELFVTF GPGSTLPKKE ALIEIYGKFG ALDEERSYVS DSNLCARVAF LNVDDGEKAF
801: ESSQENSPFA SASTIKFRLK YPNERAGEKK GEAEAAETKT VEMEHLKKKF EEMISLVDKS QGGMTEEVRV KLEEEMVNLL EEVRKMPLS
101: IKNHPWWPGQ IYDPSEASDL ALKIKQKGKM LVAYFGDGTF AWCGPSQLKP FAESFKECSN VSSSRVIVTA VEEAVEEMGR HMERLLIRDC TVELDNRVVK
201: NAGIKEGVAV RDVRREMISS LLVGKPEGIL QDVKGFAETV SFSGLLELEI VKRKVSAFFR SKRGYGLTEF PEPQPVPGLE DKNNDDDDDD EDEDFDDGGA
301: RRSTIEKGKE EEALDPEESI QRPLEKCSGF PDHRLQHRRK QKSIAEILEN ESCAKVRFEI EPEDGKGKSS RKKVKRSDEL VTTTNPKSRR MKEVAAIEED
401: SKGKRKRKKR DEEGGGEREE DEADNDSTPL ASLRKRAKVD DASSAGNGET STQNTTKRER KKSSKYFSPE FLSDFSSKGR KKTKPEPESS EVPSQSQGGE
501: LMANASNSLV VVEEEDNNSG ELLLLENGAG HQELSEELSN AVDFLRLGAT TEEIRDLIRV SALGTEYPKD SSSRDMVREF MSIYRSFTYH EGVNSKFLGS
601: YSTAGTEKEE MNGTGKPEEI EQTGKEENET TKKQRKPKTP TSKKQADEVE ESRKEVTETT KKERKRNKPE SEKKAHEGEE STKKERKAKK LKSRKQGDEE
701: EEASGSMKKD KKGKKPKFEE QETLNESEKK EREGKTKKQE FSGAELFVTF GPGSTLPKKE ALIEIYGKFG ALDEERSYVS DSNLCARVAF LNVDDGEKAF
801: ESSQENSPFA SASTIKFRLK YPNERAGEKK GEAEAAETKT VEMEHLKKKF EEMISLVDKS QGGMTEEVRV KLEEEMVNLL EEVRKMPLS
0001: MEIEVVLGIG EDAGPKPCSA EIESAEKTLK DDGVVQENGV RVSDNGEKKS DVVVDVDEKN EKNLNESGVI EDCVMNGVSS LLKLKEDVEE EEEEEEEEEE
0101: EEEDGEDEEE EEEEEEEEEE EEHGYCVGDF VWGKIKNHPW WPGQIYDPSD ASDLALKIKQ KGKLLVACFG DGTFAWCGAS QLKPFAESFK ECSKVSNSRS
0201: FLGAVEEAVE EIGRHIERVL VCDCAEEKKH EFDSPLVNNA GIKEGVLVRD VRREMISSLL IGKHGEILKD VKSFAETVSF SGLLELEILK RKVSAFYRSN
0301: RGYGLTEYHE PQSVPGLEDK NNDDDDDDEE KNVNDGLQWR AKRSRVEEVA ALDHEESSSL QRSLEKCSGF PDHRLPHRRK EKSITEIIEK ESAAKVRFET
0401: EPADGDVKSN VKSGRKKTKR HDEVNGDLEN VTTTALWRRR KSEVATIEDG GNKQVVESSK GKTSRKKKKM DVDDGDDDGS GDKEESEEKE ISDLEINIDS
0501: TSLASLRKKV RFDDSVVERS TENGETATQT SKRERKKSKY LSPDFLSDFS RKGRKKSTIE SESSKVSSQS QVDERVTDAS DSLMEVEEDT LDKPCEPSSD
0601: NGLGQEELSR ELSNAVDFLR LGATPKEMQD LIRVAALGTQ YPKDSSSRDM VREFMTIYRS FTYHDGANHK FLGSYDSSDK EKEELSEMGK PVTKGKEKKD
0701: KKGKAKQKAE EIEVTGKEEN ETDKHGKMKK ERKRKKSESK KEGGEGEETQ KEANESTKKE RKRKKSESKK QSDGEEETQK EPSESTKKER KRKNPESKKK
0801: AEAVEEEETR KESVESTKKE RKRKKPKHDE EEVPNETEKP EKKKKKKREG KSKKKETETE FSGAELYVTF GPGSSLPKKE DLIEIYEKFG ALDKERTDTV
0901: DNNFSAHVAF LDVADGEKAF ESSLEKCPFT SNSTVKFRLK YPNERTEEKK TEAEVAETTM EVEYLKKKLD EMKLLLDGCE GGMTEEVKVK LEGEMVNLLE
1001: KVIEMRSS
0101: EEEDGEDEEE EEEEEEEEEE EEHGYCVGDF VWGKIKNHPW WPGQIYDPSD ASDLALKIKQ KGKLLVACFG DGTFAWCGAS QLKPFAESFK ECSKVSNSRS
0201: FLGAVEEAVE EIGRHIERVL VCDCAEEKKH EFDSPLVNNA GIKEGVLVRD VRREMISSLL IGKHGEILKD VKSFAETVSF SGLLELEILK RKVSAFYRSN
0301: RGYGLTEYHE PQSVPGLEDK NNDDDDDDEE KNVNDGLQWR AKRSRVEEVA ALDHEESSSL QRSLEKCSGF PDHRLPHRRK EKSITEIIEK ESAAKVRFET
0401: EPADGDVKSN VKSGRKKTKR HDEVNGDLEN VTTTALWRRR KSEVATIEDG GNKQVVESSK GKTSRKKKKM DVDDGDDDGS GDKEESEEKE ISDLEINIDS
0501: TSLASLRKKV RFDDSVVERS TENGETATQT SKRERKKSKY LSPDFLSDFS RKGRKKSTIE SESSKVSSQS QVDERVTDAS DSLMEVEEDT LDKPCEPSSD
0601: NGLGQEELSR ELSNAVDFLR LGATPKEMQD LIRVAALGTQ YPKDSSSRDM VREFMTIYRS FTYHDGANHK FLGSYDSSDK EKEELSEMGK PVTKGKEKKD
0701: KKGKAKQKAE EIEVTGKEEN ETDKHGKMKK ERKRKKSESK KEGGEGEETQ KEANESTKKE RKRKKSESKK QSDGEEETQK EPSESTKKER KRKNPESKKK
0801: AEAVEEEETR KESVESTKKE RKRKKPKHDE EEVPNETEKP EKKKKKKREG KSKKKETETE FSGAELYVTF GPGSSLPKKE DLIEIYEKFG ALDKERTDTV
0901: DNNFSAHVAF LDVADGEKAF ESSLEKCPFT SNSTVKFRLK YPNERTEEKK TEAEVAETTM EVEYLKKKLD EMKLLLDGCE GGMTEEVKVK LEGEMVNLLE
1001: KVIEMRSS
Arabidopsis Description
Tudor/PWWP/MBT superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FNE4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.