Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX86465 | Canola | nucleus | 100.0 | 100.0 |
| AT3G27860.1 | Thale cress | nucleus | 33.65 | 27.3 |
| Bra028857.1-P | Field mustard | nucleus | 15.31 | 17.61 |
| Bra028455.1-P | Field mustard | nucleus | 28.54 | 16.99 |
| KRH56588 | Soybean | nucleus | 21.17 | 15.69 |
| KRH07190 | Soybean | nucleus | 27.41 | 15.47 |
| KRG94143 | Soybean | nucleus | 26.28 | 14.99 |
| PGSC0003DMT400001285 | Potato | nucleus | 23.44 | 14.89 |
| Solyc02g086750.1.1 | Tomato | nucleus | 23.44 | 14.85 |
| VIT_14s0066g01120.t01 | Wine grape | nucleus | 25.52 | 13.87 |
| Bra001301.1-P | Field mustard | nucleus | 7.75 | 12.13 |
| KRG93266 | Soybean | nucleus | 23.25 | 11.21 |
| Bra036620.1-P | Field mustard | nucleus | 16.64 | 8.54 |
| Bra018079.1-P | Field mustard | nucleus | 6.05 | 3.58 |
Protein Annotations
| EnsemblPlants:Bra025306.1 | EnsemblPlants:Bra025306.1-P | EnsemblPlantsGene:Bra025306 | Gene3D:2.30.30.140 | GO:GO:0005575 | GO:GO:0016020 |
| InterPro:IPR000313 | InterPro:PWWP_dom | ncoils:Coil | PANTHER:PTHR10688 | PANTHER:PTHR10688:SF3 | PFAM:PF00855 |
| SEG:seg | SUPFAM:SSF63748 | UniParc:UPI000253FC32 | UniProt:M4E950 | MapMan:35.2 | : |
Description
AT3G27860 (E=4e-080) | PWWP domain-containing protein
Coordinates
chrA06:-:22276790..22278379
Molecular Weight (calculated)
59780.4 Da
IEP (calculated)
5.967
GRAVY (calculated)
-0.709
Length
529 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNFLTTGSR VSENREETDM NGSSEDEPKS NDVNMESVND SGPVEDYVMS EASSLLNTKQ DHSRDGFHVG DFVWVQGVNR HQWWPGKVYD SSDASDLALK
101: HMQKGTLLVA LSWKETFAWC TPSQLKPFIE NFKDFSKTSG SSSFLSAVRE AVREIGQRVE NLLVCDEALV SPVAVNCGVK EGALVPDVRR ETLTSLVLEK
201: PGIVLEDVKS LAKEASFGDV LEIEVLKRKI SAFYRCKGMF CLAKYDDENP YIIGLEDKED EYTFKKSSGQ ESLRKCSKHP SNKKRKHGGE VSKCSNHLEE
301: SEKKEESGID IVVDLSTPLS LLCKRVKVDD VFSSVERNNG SGETIVHRGK RERKKSKYLS PEYMTDFSWS RRKSKLESES AEKMTKSPAE KAINFVSLGA
401: TTEEILELIR AASLSTQHSQ ECKSSYDMIR EFASIYRSFT YVTGANYKRN GSDEDKQLEV KVNKRETPEN TNEKKGVTDL EWLKKKLEKM RALLDESEGG
501: EVREELKMKL EEESRNLLDK VRKMTVCSS
101: HMQKGTLLVA LSWKETFAWC TPSQLKPFIE NFKDFSKTSG SSSFLSAVRE AVREIGQRVE NLLVCDEALV SPVAVNCGVK EGALVPDVRR ETLTSLVLEK
201: PGIVLEDVKS LAKEASFGDV LEIEVLKRKI SAFYRCKGMF CLAKYDDENP YIIGLEDKED EYTFKKSSGQ ESLRKCSKHP SNKKRKHGGE VSKCSNHLEE
301: SEKKEESGID IVVDLSTPLS LLCKRVKVDD VFSSVERNNG SGETIVHRGK RERKKSKYLS PEYMTDFSWS RRKSKLESES AEKMTKSPAE KAINFVSLGA
401: TTEEILELIR AASLSTQHSQ ECKSSYDMIR EFASIYRSFT YVTGANYKRN GSDEDKQLEV KVNKRETPEN TNEKKGVTDL EWLKKKLEKM RALLDESEGG
501: EVREELKMKL EEESRNLLDK VRKMTVCSS
001: MGNILPTGSR VSENEGSDDN KLKEHDVKME NVKEDSEQIG DNVRSGVSSL RDNFEELENG FHVGDFVWGE EANSQQWWPG QIYDSLDASD LALKTMQKGK
101: LLVAYFGDGS FFGWCNPLEL KPFLENFKEF SKMSDSRRFL LAVEDAVREI GEHVEKFLVC DDAALVSSVA LNLGIKDGVV VPDVRRKIIS SLVLENPGVV
201: LEDVKRLAMT VRFDDLLEIE VLRRKISAFY RCKGRFDLAK FDEHRYIIGL EDKEHESCQR LLRKCSGFAS KKRKCGDVAT TGSTTLRKKR LSEVSKIETA
301: EKEISNGKSL SSRKRKSKRG LDENDDDGIE KREESNDSNH LEESEKKDDL ATPLASICKR LNVDVSSCVK RCNGNGEAIL QTGKRERKKS KYLSPEYMTD
401: FSCRARKIKI ESAESSQIQV AVRMTTPNTA IDVVKLGATP EEMLALIRAA ALNAQYPKDY NSTSCDMVRE FVSNYRSFNN KRNLSDVEKQ PEVKQEIVDE
501: KEKTRNEPGV ELYIKTGFGS TLPSKDDLIK TYEKFGALDK ERSYMFNNNS CSCVAFVNAS DGEEAFNRSL EKCPFATTST VTFKLEYPSS ASSEKKEAET
601: RKGVTEIECL KEKLEGIRAL LDQSEGKITE ELKMKLEDES RNLLDKVRKM II
101: LLVAYFGDGS FFGWCNPLEL KPFLENFKEF SKMSDSRRFL LAVEDAVREI GEHVEKFLVC DDAALVSSVA LNLGIKDGVV VPDVRRKIIS SLVLENPGVV
201: LEDVKRLAMT VRFDDLLEIE VLRRKISAFY RCKGRFDLAK FDEHRYIIGL EDKEHESCQR LLRKCSGFAS KKRKCGDVAT TGSTTLRKKR LSEVSKIETA
301: EKEISNGKSL SSRKRKSKRG LDENDDDGIE KREESNDSNH LEESEKKDDL ATPLASICKR LNVDVSSCVK RCNGNGEAIL QTGKRERKKS KYLSPEYMTD
401: FSCRARKIKI ESAESSQIQV AVRMTTPNTA IDVVKLGATP EEMLALIRAA ALNAQYPKDY NSTSCDMVRE FVSNYRSFNN KRNLSDVEKQ PEVKQEIVDE
501: KEKTRNEPGV ELYIKTGFGS TLPSKDDLIK TYEKFGALDK ERSYMFNNNS CSCVAFVNAS DGEEAFNRSL EKCPFATTST VTFKLEYPSS ASSEKKEAET
601: RKGVTEIECL KEKLEGIRAL LDQSEGKITE ELKMKLEDES RNLLDKVRKM II
Arabidopsis Description
Tudor/PWWP/MBT superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LK91]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.