Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G234800.1 | Wheat | nucleus | 91.6 | 91.74 |
| HORVU4Hr1G013680.2 | Barley | nucleus | 91.3 | 91.3 |
| KXG38024 | Sorghum | nucleus | 71.45 | 74.05 |
| Os03t0616300-01 | Rice | nucleus | 65.8 | 69.85 |
| Zm00001d013729_P003 | Maize | nucleus | 70.53 | 68.14 |
| GSMUA_Achr5P01740_001 | Banana | nucleus | 55.88 | 56.66 |
| PGSC0003DMT400066146 | Potato | nucleus | 56.03 | 53.34 |
| Solyc01g107010.2.1 | Tomato | nucleus | 55.73 | 53.05 |
| KRH27580 | Soybean | nucleus | 54.2 | 52.36 |
| CDY50970 | Canola | nucleus | 52.21 | 52.29 |
| CDY28119 | Canola | nucleus | 51.91 | 51.52 |
| AT1G49980.1 | Thale cress | nucleus | 52.52 | 51.27 |
| Bra018821.1-P | Field mustard | nucleus | 52.21 | 50.29 |
| VIT_03s0091g00860.t01 | Wine grape | nucleus | 53.89 | 50.14 |
| KRH77930 | Soybean | cytosol | 47.02 | 49.04 |
| TraesCS3B01G329300.8 | Wheat | nucleus | 16.03 | 16.28 |
| TraesCS7B01G335900.1 | Wheat | plastid | 19.24 | 10.76 |
| TraesCS7B01G319400.1 | Wheat | cytosol | 7.18 | 10.15 |
Protein Annotations
| KEGG:00230+2.7.7.7 | KEGG:00240+2.7.7.7 | Gene3D:1.10.150.810 | MapMan:14.2.3 | Gene3D:2.30.40.20 | Gene3D:3.30.1490.100 |
| Gene3D:3.30.70.270 | InterPro:DNA_pol_Y-fam_lit_finger_sf | InterPro:DNA_pol_Y-fam_little_finger | InterPro:DNA_pol_eta/kappa/iota/IV | InterPro:DNApol_IV | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003684 | GO:GO:0003697 | GO:GO:0003824 | GO:GO:0003887 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006281 | GO:GO:0006950 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016740 | InterPro:IPR001126 |
| InterPro:IPR036775 | HAMAP:MF_01113 | PFAM:PF00817 | PFAM:PF11799 | PIRSF:PIRSF036603 | PFscan:PS50173 |
| PANTHER:PTHR11076 | PANTHER:PTHR11076:SF33 | SUPFAM:SSF100879 | SUPFAM:SSF56672 | EnsemblPlantsGene:TraesCS4B01G080200 | EnsemblPlants:TraesCS4B01G080200.1 |
| InterPro:UmuC | TIGR:cd03586 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr4B:+:78015789..78021618
Molecular Weight (calculated)
72391.4 Da
IEP (calculated)
6.218
GRAVY (calculated)
-0.468
Length
655 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSAAGASSD GGGDRPWQSY HTAYTNAKAG MEGVDKEKVL KVIYEMSKGS KYFENEQKKE AITKLKIEHL RAQCAKLTDN DISHFQKVAE NKILELEASR
101: DLSKIWLHTD MDAFYAAVET LENPSLKGKP LAVGSMSMIA TASYEARKFG VRAAMPGFIG CKLCPDLVFV RPNFERYTHY SGLARKVFQR YDPNFFATSL
201: DEAYLDITKV CIERGITGEE VASELRDAVL QETGLTCSAG VAPNRMIAKV CSDINKPNGQ FILPNDRDAV TTFVSTLPIR KIGGIGKVTE QMLHQVLGIS
301: TCQEMLQKAA FLCALFSEGS TDFFLSVGLG LGGTETPEHR LRKSMSCERT FSATNDSRLF FEKLDNLAEN LADDLQKEGL KGRTLTLKLK TAAFEVRTRA
401: ATAQNYISSK EDILIYAKKL LKAEMPLSLR LMGLRMSHFS GEKDDSTSPT QKTLDRFFHS SDINSNTNGT NGASCIDVSG GHNDCSDATT KDEYSIHDAE
501: KDVSIDQQSS HDENSSVPEG ASSVNYDNEA TSSSWKVTQT EKFDELGDLT SSKACASSSK PGQHFWVDGY ICSLCGFELP PCFEEERQEH SDFHLAEMLQ
601: QEEAVDNTAR LSKERLAERP CSTTSTPTAK KKLKSSKEGK HIPIDSFFLK CNKKL
101: DLSKIWLHTD MDAFYAAVET LENPSLKGKP LAVGSMSMIA TASYEARKFG VRAAMPGFIG CKLCPDLVFV RPNFERYTHY SGLARKVFQR YDPNFFATSL
201: DEAYLDITKV CIERGITGEE VASELRDAVL QETGLTCSAG VAPNRMIAKV CSDINKPNGQ FILPNDRDAV TTFVSTLPIR KIGGIGKVTE QMLHQVLGIS
301: TCQEMLQKAA FLCALFSEGS TDFFLSVGLG LGGTETPEHR LRKSMSCERT FSATNDSRLF FEKLDNLAEN LADDLQKEGL KGRTLTLKLK TAAFEVRTRA
401: ATAQNYISSK EDILIYAKKL LKAEMPLSLR LMGLRMSHFS GEKDDSTSPT QKTLDRFFHS SDINSNTNGT NGASCIDVSG GHNDCSDATT KDEYSIHDAE
501: KDVSIDQQSS HDENSSVPEG ASSVNYDNEA TSSSWKVTQT EKFDELGDLT SSKACASSSK PGQHFWVDGY ICSLCGFELP PCFEEERQEH SDFHLAEMLQ
601: QEEAVDNTAR LSKERLAERP CSTTSTPTAK KKLKSSKEGK HIPIDSFFLK CNKKL
001: MDNGESSSTN NSSRPWESYN TVFTNAKAGM EGVDKEKVQR VVYEMSKGSK YFQNEERKEA LMKQKIEHMR DRCAKLSSLD LSNYQKVVDK RILELEATRD
101: LSRIWLHVDM DAFYAAVETL SDPSIKGKPM AVGGLSMIST ANYEARKFGV RAAMPGFIAR KLCPDLIFVP VDFTKYTHYS DLTRKVFRNY DPHFIAGSLD
201: EAYLDITEVC RERGLSGGEI AEELRSSVYS ETGLTCSAGV AANRLLAKVC SDINKPNGQF VLQNDRSTVM TFVSFLPVRK IGGIGKVTEH ILKDALGIKT
301: CEEMVQKGSL LYALFSQSSA DFFLSVGLGL GGTNTPQVRS RKSISSERTF AATGDERLLY SKLDELAEML SHDMKKEGLT ARTLTLKLKT ASFEIRSRAV
401: SLQRYTCSSD DILKHATKLL KAELPVSVRL IGLRMSQFVE EIRNSDPSQG TITKFIVQKD SSRQAQDLDD NDSFDLDANK NCLSNDESGN VSFGSHETSS
501: AHLKDVVEYE ERSQIDSGKV IPNQECMKKE ERLQILEGDS LLKKYKECKP DTSHSMNDNS NATEAVSVFP QTEPLYWIDG YKCVLCGIEL PPSFVEERQE
601: HSDFHLAQRL QNEETGSSSS TTPSKRRILG KEKVNSKPKK QKPDQKDSSK HIPIHAFFTK SNQNS
101: LSRIWLHVDM DAFYAAVETL SDPSIKGKPM AVGGLSMIST ANYEARKFGV RAAMPGFIAR KLCPDLIFVP VDFTKYTHYS DLTRKVFRNY DPHFIAGSLD
201: EAYLDITEVC RERGLSGGEI AEELRSSVYS ETGLTCSAGV AANRLLAKVC SDINKPNGQF VLQNDRSTVM TFVSFLPVRK IGGIGKVTEH ILKDALGIKT
301: CEEMVQKGSL LYALFSQSSA DFFLSVGLGL GGTNTPQVRS RKSISSERTF AATGDERLLY SKLDELAEML SHDMKKEGLT ARTLTLKLKT ASFEIRSRAV
401: SLQRYTCSSD DILKHATKLL KAELPVSVRL IGLRMSQFVE EIRNSDPSQG TITKFIVQKD SSRQAQDLDD NDSFDLDANK NCLSNDESGN VSFGSHETSS
501: AHLKDVVEYE ERSQIDSGKV IPNQECMKKE ERLQILEGDS LLKKYKECKP DTSHSMNDNS NATEAVSVFP QTEPLYWIDG YKCVLCGIEL PPSFVEERQE
601: HSDFHLAQRL QNEETGSSSS TTPSKRRILG KEKVNSKPKK QKPDQKDSSK HIPIHAFFTK SNQNS
Arabidopsis Description
POLKDNA polymerase kappa [Source:UniProtKB/Swiss-Prot;Acc:Q6JDV7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.