Factsheet for Bra018821.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY50970	Canola	nucleus	94.12	97.86
AT1G49980.1	Thale cress	nucleus	80.74	81.82
Solyc01g107010.2.1	Tomato	nucleus	57.79	57.12
KRH27580	Soybean	nucleus	56.76	56.93
PGSC0003DMT400066146	Potato	nucleus	57.35	56.69
VIT_03s0091g00860.t01	Wine grape	nucleus	58.68	56.68
KRH77930	Soybean	cytosol	50.74	54.94
KXG38024	Sorghum	nucleus	50.44	54.27
HORVU4Hr1G013680.2	Barley	nucleus	51.47	53.44
GSMUA_Achr5P01740_001	Banana	nucleus	50.29	52.94
TraesCS4A01G234800.1	Wheat	nucleus	50.74	52.75
TraesCS4B01G080200.1	Wheat	nucleus	50.29	52.21
Zm00001d013729_P003	Maize	nucleus	51.32	51.47
Os03t0616300-01	Rice	nucleus	45.88	50.57
Bra025107.1-P	Field mustard	nucleus	18.09	17.8
Bra025106.1-P	Field mustard	plastid	18.68	11.5

Protein Annotations

KEGG:00230+2.7.7.7	KEGG:00240+2.7.7.7	Gene3D:1.10.150.810	MapMan:14.2.3	Gene3D:2.30.40.20	Gene3D:3.30.1490.100
Gene3D:3.30.70.270	EnsemblPlantsGene:Bra018821	EnsemblPlants:Bra018821.1	EnsemblPlants:Bra018821.1-P	InterPro:DNA_pol_Y-fam_lit_finger_sf	InterPro:DNA_pol_Y-fam_little_finger
InterPro:DNA_pol_eta/kappa/iota/IV	InterPro:DNApol_IV	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003684
GO:GO:0003697	GO:GO:0003824	GO:GO:0003887	GO:GO:0005488	GO:GO:0005575	GO:GO:0006139
GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016020	GO:GO:0016740	GO:GO:0071897	InterPro:IPR001126	InterPro:IPR036775
UniProt:M4DQM8	HAMAP:MF_01113	PFAM:PF00817	PFAM:PF11799	PIRSF:PIRSF036603	PFscan:PS50173
PANTHER:PTHR11076	PANTHER:PTHR11076:SF33	SUPFAM:SSF100879	SUPFAM:SSF56672	UniParc:UPI000253EB69	InterPro:UmuC
SEG:seg	:	:	:	:	:

Description

AT1G49980 (E=1e-296) | DNA-directed DNA polymerase/ damaged DNA binding

Coordinates

chrA06:-:1758637..1762071

Molecular Weight (calculated)

76174.3 Da

IEP (calculated)

7.060

GRAVY (calculated)

-0.534

Length

680 amino acids

Sequence
(BLAST)

001: MDDEGESSSN SPSRPWESYN TVFTNAKAGM EGVDKEKVQR IVYEMSKGSK YFQNEERKEA LMKQKIEHMR DRCAKLSSSD LSNYQKVVDR RILELEATRD
101: LSRVWLHVDM DAFYAAVETL SNPSLKGKPM AVGGLSMIST ANYEARKFGV RAAMPGFIAR KLCPDLIFVP VDFSKYTHYS DLTRKVFRNY DPNFIAGSLD
201: EAYLDITEVC RERGLSGGEI AEELRSSVHS ETGGLTCSAG VAANRLLAKV CSDINKPNGQ FVLQNDRSTV MTFISLLPIR KIGGIGKVTE HILKDALEIK
301: TCGDMVLKGS LLYALFTQSS ADFFLSVGLG LGKTDTPEVR SRKSISSERT FAATGDERLL YSKLAEIAEM LSDDMKKEGL MARTLTLKLK TATFEVDFQM
401: HSSFSSLETH ICAESVTICN HQIRSRAVSL QRYTCSSEDI LKHATKLLKA ELPVSIRLIG LRMSQFNEEA RHSDPSQGTI TKFIVQKGSS RQNLDDNDSF
501: DLDASKNCLG NDEMLSLSYA SHETSYDQLK DVVEYEEQSV TPNQECKKKE DRTQVLEGDA LLRKHKDCKA DSNAEKTEAV SVFPQMEPLV WVDGYRCNLC
601: GIELPPSFVE ERQEHSDFHL AQRLQNEESG PSSSTTPTSK RRILGKEKAN SKPKKQKPNQ KDGSKHIPIH TFFTKSNQNS

Best Arabidopsis Sequence Match ( AT1G49980.1 )
(BLAST)

001: MDNGESSSTN NSSRPWESYN TVFTNAKAGM EGVDKEKVQR VVYEMSKGSK YFQNEERKEA LMKQKIEHMR DRCAKLSSLD LSNYQKVVDK RILELEATRD
101: LSRIWLHVDM DAFYAAVETL SDPSIKGKPM AVGGLSMIST ANYEARKFGV RAAMPGFIAR KLCPDLIFVP VDFTKYTHYS DLTRKVFRNY DPHFIAGSLD
201: EAYLDITEVC RERGLSGGEI AEELRSSVYS ETGLTCSAGV AANRLLAKVC SDINKPNGQF VLQNDRSTVM TFVSFLPVRK IGGIGKVTEH ILKDALGIKT
301: CEEMVQKGSL LYALFSQSSA DFFLSVGLGL GGTNTPQVRS RKSISSERTF AATGDERLLY SKLDELAEML SHDMKKEGLT ARTLTLKLKT ASFEIRSRAV
401: SLQRYTCSSD DILKHATKLL KAELPVSVRL IGLRMSQFVE EIRNSDPSQG TITKFIVQKD SSRQAQDLDD NDSFDLDANK NCLSNDESGN VSFGSHETSS
501: AHLKDVVEYE ERSQIDSGKV IPNQECMKKE ERLQILEGDS LLKKYKECKP DTSHSMNDNS NATEAVSVFP QTEPLYWIDG YKCVLCGIEL PPSFVEERQE
601: HSDFHLAQRL QNEETGSSSS TTPSKRRILG KEKVNSKPKK QKPDQKDSSK HIPIHAFFTK SNQNSNETQR K

Arabidopsis Description

POLKDNA polymerase kappa [Source:UniProtKB/Swiss-Prot;Acc:Q6JDV7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.