Factsheet for Os03t0616300-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
extracellular 1
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG38024	Sorghum	nucleus	73.1	71.36
HORVU4Hr1G013680.2	Barley	nucleus	72.61	68.4
TraesCS4A01G234800.1	Wheat	nucleus	72.45	68.35
TraesCS4B01G080200.1	Wheat	nucleus	69.85	65.8
Zm00001d013729_P003	Maize	nucleus	70.5	64.16
GSMUA_Achr5P01740_001	Banana	nucleus	55.43	52.94
Solyc01g107010.2.1	Tomato	nucleus	53.97	48.4
PGSC0003DMT400066146	Potato	nucleus	53.32	47.82
CDY50970	Canola	nucleus	50.57	47.71
VIT_03s0091g00860.t01	Wine grape	nucleus	54.13	47.44
CDY28119	Canola	nucleus	50.57	47.27
AT1G49980.1	Thale cress	nucleus	51.38	47.24
KRH27580	Soybean	nucleus	51.7	47.05
Bra018821.1-P	Field mustard	nucleus	50.57	45.88
KRH77930	Soybean	cytosol	45.06	44.27
Os01t0757800-01	Rice	cytosol	17.18	16.51
Os06t0691000-01	Rice	plastid	17.99	9.87

Protein Annotations

KEGG:00230+2.7.7.7	KEGG:00240+2.7.7.7	Gene3D:1.10.150.810	MapMan:14.2.3	Gene3D:2.30.40.20	Gene3D:3.30.1490.100
Gene3D:3.30.70.270	ProteinID:BAF12574.1	ProteinID:BAS85274.1	ncoils:Coil	InterPro:DNA_pol_Y-fam_lit_finger_sf	InterPro:DNA_pol_Y-fam_little_finger
InterPro:DNA_pol_eta/kappa/iota/IV	InterPro:DNApol_IV	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003684
GO:GO:0003697	GO:GO:0003824	GO:GO:0003887	GO:GO:0005488	GO:GO:0005575	GO:GO:0006139
GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016020	GO:GO:0016740	GO:GO:0071897	InterPro:IPR001126	InterPro:IPR036775
HAMAP:MF_01113	EnsemblPlantsGene:Os03g0616300	EnsemblPlants:Os03t0616300-01	PFAM:PF00817	PFAM:PF11799	PIRSF:PIRSF036603
PFscan:PS50173	PANTHER:PTHR11076	PANTHER:PTHR11076:SF33	UniProt:Q0DQB4	SUPFAM:SSF100879	SUPFAM:SSF56672
UniParc:UPI0000E1214D	InterPro:UmuC	SEG:seg	:	:	:

Description

Similar to DNA polymerase kappa (EC 2.7.7.7) (DINB protein) (DINP). Splice isoform 4. (Os03t0616300-01);Similar to F2J10.13 protein. (Os03t0616300-02)

Coordinates

chr3:+:23334978..23340914

Molecular Weight (calculated)

68407.1 Da

IEP (calculated)

5.589

GRAVY (calculated)

-0.451

Length

617 amino acids

Sequence
(BLAST)

001: MAGTPPDGGG DRPWESYHTA YTNAKAGMEG VDKEKVQKQV AEHKILELEA SRDLSKIWLH TDMDAFYATV EILENPSLKG KPLAVGSMSM IATASYEARK
101: FGVRAAMPGF IGCKLCPELV FVRPNFERYT YYSELTRKVF QRYDPNFVAT SLDEAYLNIT KVCFDRGITG EEVATELRGA IHQETGLTCS AGVAPNRMIA
201: KVCSDINKPN GQFILPNDQE AVTTFVSTLP IRKIGGIGKV TEQMLRQVLG ISTCQEMLQK ASFLCALFSE SSADFFISVG LGLGGTETPE QRLRKSISCE
301: RTFRATDDCS MLFEKLDSLA DNLADDMQKE CLKGRTLTLK LKTAAFEVRT RAVTTQNYIN SKEDILIYAR KLLKAELPLS LRLMGLRMSQ LRDEKDDSST
401: QTQKTLDRFF RTPDNSNVIG ANSPSIGNTT GGDNYCTNVM TKVDYLEHDS MDDQALFLHE KNLFVPEGRS SDNYNNDAAS SNPLMCDGVG GKELDDDSSS
501: SKGTHTVKFD GQLTSSNATT SSSKPDQLFW INGYICSICG FELPPGFEEE RQEHSDFHLA EMLQQEEAVD STGPLSKERL AERPCSSTPT PKKKLKSSKE
601: GKHIPIDAFF HKVNKNL

Best Arabidopsis Sequence Match ( AT1G49980.1 )
(BLAST)

001: MDNGESSSTN NSSRPWESYN TVFTNAKAGM EGVDKEKVQR VVYEMSKGSK YFQNEERKEA LMKQKIEHMR DRCAKLSSLD LSNYQKVVDK RILELEATRD
101: LSRIWLHVDM DAFYAAVETL SDPSIKGKPM AVGGLSMIST ANYEARKFGV RAAMPGFIAR KLCPDLIFVP VDFTKYTHYS DLTRKVFRNY DPHFIAGSLD
201: EAYLDITEVC RERGLSGGEI AEELRSSVYS ETGLTCSAGV AANRLLAKVC SDINKPNGQF VLQNDRSTVM TFVSFLPVRK IGGIGKVTEH ILKDALGIKT
301: CEEMVQKGSL LYALFSQSSA DFFLSVGLGL GGTNTPQVRS RKSISSERTF AATGDERLLY SKLDELAEML SHDMKKEGLT ARTLTLKLKT ASFEIRSRAV
401: SLQRYTCSSD DILKHATKLL KAELPVSVRL IGLRMSQFVE EIRNSDPSQG TITKFIVQKD SSRQAQDLDD NDSFDLDANK NCLSNDESGN VSFGSHETSS
501: AHLKDVVEYE ERSQIDSGKV IPNQECMKKE ERLQILEGDS LLKKYKECKP DTSHSMNDNS NATEAVSVFP QTEPLYWIDG YKCVLCGIEL PPSFVEERQE
601: HSDFHLAQRL QNEETGSSSS TTPSKRRILG KEKVNSKPKK QKPDQKDSSK HIPIHAFFTK SNQNSNETQR K

Arabidopsis Description

POLKDNA polymerase kappa [Source:UniProtKB/Swiss-Prot;Acc:Q6JDV7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.