Factsheet for PGSC0003DMT400066146

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g107010.2.1	Tomato	nucleus	89.83	89.83
VIT_03s0091g00860.t01	Wine grape	nucleus	62.21	60.8
CDY50970	Canola	nucleus	56.98	59.94
KRH27580	Soybean	nucleus	59.01	59.88
CDY28119	Canola	nucleus	57.12	59.55
AT1G49980.1	Thale cress	nucleus	57.56	59.02
Bra018821.1-P	Field mustard	nucleus	56.69	57.35
HORVU4Hr1G013680.2	Barley	nucleus	54.36	57.1
TraesCS4A01G234800.1	Wheat	nucleus	54.22	57.03
KXG38024	Sorghum	nucleus	52.33	56.96
KRH77930	Soybean	cytosol	51.6	56.53
GSMUA_Achr5P01740_001	Banana	nucleus	52.76	56.19
TraesCS4B01G080200.1	Wheat	nucleus	53.34	56.03
Zm00001d013729_P003	Maize	nucleus	54.51	55.31
Os03t0616300-01	Rice	nucleus	47.82	53.32
PGSC0003DMT400002635	Potato	cytosol	11.48	24.23
PGSC0003DMT400066206	Potato	cytosol, plastid	6.54	12.1
PGSC0003DMT400002636	Potato	extracellular	6.69	11.5

Protein Annotations

KEGG:00230+2.7.7.7	KEGG:00240+2.7.7.7	Gene3D:1.10.150.810	EntrezGene:102583515	MapMan:14.2.3	Gene3D:2.30.40.20
Gene3D:3.30.1490.100	Gene3D:3.30.70.270	InterPro:DNA_pol_Y-fam_lit_finger_sf	InterPro:DNA_pol_Y-fam_little_finger	InterPro:DNA_pol_eta/kappa/iota/IV	InterPro:DNApol_IV
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003684	GO:GO:0003697	GO:GO:0003824
GO:GO:0003887	GO:GO:0005488	GO:GO:0005575	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020
GO:GO:0016740	GO:GO:0071897	InterPro:IPR001126	InterPro:IPR036775	UniProt:M1CF26	HAMAP:MF_01113
PFAM:PF00817	PFAM:PF11799	EnsemblPlantsGene:PGSC0003DMG400025743	PGSC:PGSC0003DMG400025743	EnsemblPlants:PGSC0003DMT400066146	PIRSF:PIRSF036603
PFscan:PS50173	PANTHER:PTHR11076	PANTHER:PTHR11076:SF33	SUPFAM:SSF100879	SUPFAM:SSF56672	UniParc:UPI000296921C
InterPro:UmuC	RefSeq:XP_006346296.1	SEG:seg	:	:	:

Description

DNA-directed polymerase kappa [Source:PGSC_GENE;Acc:PGSC0003DMG400025743]

Coordinates

chr1:+:83586545..83592390

Molecular Weight (calculated)

76824.9 Da

IEP (calculated)

6.416

GRAVY (calculated)

-0.475

Length

688 amino acids

Sequence
(BLAST)

001: MAKSETSVGS EDPSSSRPWE SYHTVFTNAK AGMEGVDKEK VQRIVYEMSK GSKYFENEEK KEAYTKQKIE NMRIQYSKLT AQDISHHQKI ADKRILELEA
101: TRDLSRIWLH VDMDAFYAAV ETLCNPSLKG RPMAVGSMSM LSTANYEARK FGVRAAMPGF IARKLCPELL FVPVDFQKYN HYSNLTRKVF QKYDPNFLAA
201: SLDEAYLDIT SVCKERGITS GEVAEELRES VHLETGLTCS AGVAPNRLLA KVCSDINKPN GQFVLPNDRS AVVTFISSLP IRKIGGIGKV TERILKDVFG
301: IATCEEMLQK SSFLCGLFSH SSADFFLSVG LGLGGTNTPQ YRMRKSISNE RTFSATEDEA LLFQKLVDLA EMLSADMKKE GLFGRTVTLK LKTASFEVRS
401: RAVTLPSYIS SSEEILKHAS KLLKAEFPVS LRLMGLRMSH FSEDKNGIPP DPTQKTLSNF ILSGDASGVK TSDYRPLVSD VCDNTFSVDE NCCPTYCAET
501: SCDLRDSSME NTASDSTYSC HVIGNINEEL NETVVPQSSE PQPKVHEPTD TDHTIKSDKV DSYMGQLEAS SCDRWEIGVN CTNDEAGSVS DQKQLFLWVD
601: DYKCPICGIE MPPSFIEERQ EHSDFHLAEK LQGEESGNHR RSFLPQQRAP QRGHTGSSSR QKKKQKSSPT ASKYVPIDAF FVKTNQNF

Best Arabidopsis Sequence Match ( AT1G49980.1 )
(BLAST)

001: MDNGESSSTN NSSRPWESYN TVFTNAKAGM EGVDKEKVQR VVYEMSKGSK YFQNEERKEA LMKQKIEHMR DRCAKLSSLD LSNYQKVVDK RILELEATRD
101: LSRIWLHVDM DAFYAAVETL SDPSIKGKPM AVGGLSMIST ANYEARKFGV RAAMPGFIAR KLCPDLIFVP VDFTKYTHYS DLTRKVFRNY DPHFIAGSLD
201: EAYLDITEVC RERGLSGGEI AEELRSSVYS ETGLTCSAGV AANRLLAKVC SDINKPNGQF VLQNDRSTVM TFVSFLPVRK IGGIGKVTEH ILKDALGIKT
301: CEEMVQKGSL LYALFSQSSA DFFLSVGLGL GGTNTPQVRS RKSISSERTF AATGDERLLY SKLDELAEML SHDMKKEGLT ARTLTLKLKT ASFEIRSRAV
401: SLQRYTCSSD DILKHATKLL KAELPVSVRL IGLRMSQFVE EIRNSDPSQG TITKFIVQKD SSRQAQDLDD NDSFDLDANK NCLSNDESGN VSFGSHETSS
501: AHLKDVVEYE ERSQIDSGKV IPNQECMKKE ERLQILEGDS LLKKYKECKP DTSHSMNDNS NATEAVSVFP QTEPLYWIDG YKCVLCGIEL PPSFVEERQE
601: HSDFHLAQRL QNEETGSSSS TTPSKRRILG KEKVNSKPKK QKPDQKDSSK HIPIHAFFTK SNQNSNETQR K

Arabidopsis Description

POLKDNA polymerase kappa [Source:UniProtKB/Swiss-Prot;Acc:Q6JDV7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.