Factsheet for PGSC0003DMT400002635

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d046782_P001	Maize	cytosol	54.91	71.6
Zm00001d019198_P001	Maize	cytosol	54.91	71.6
Zm00001d002308_P001	Maize	cytosol	53.68	70.28
Zm00001d053264_P001	Maize	cytosol	63.5	59.31
Zm00001d037012_P001	Maize	cytosol	38.96	58.8
Zm00001d023711_P001	Maize	nucleus	30.37	43.42
Zm00001d031070_P002	Maize	cytosol, nucleus, peroxisome	58.28	38.0
GSMUA_Achr10P...	Banana	cytosol	69.33	34.4
AT5G44740.2	Thale cress	nucleus	70.86	34.38
TraesCS3A01G294700.3	Wheat	nucleus	65.95	34.29
TraesCS3D01G294800.3	Wheat	nucleus	65.95	34.18
Os01t0757800-01	Rice	cytosol	67.18	34.11
EES01500	Sorghum	nucleus	65.64	33.65
CDY39396	Canola	nucleus	68.71	33.23
CDY60652	Canola	nucleus	68.4	33.14
HORVU3Hr1G072920.6	Barley	cytosol, nucleus	65.95	33.08
Bra025107.1-P	Field mustard	nucleus	69.94	33.0
TraesCS3B01G329300.8	Wheat	nucleus	65.03	32.87
Zm00001d043404_P001	Maize	nucleus	65.34	31.51
KRH42423	Soybean	nucleus	67.18	31.15
Zm00001d044720_P002	Maize	nucleus	50.31	30.83
VIT_01s0011g01180.t01	Wine grape	nucleus	73.01	30.79
Zm00001d051953_P002	Maize	nucleus	51.84	30.07
Zm00001d014510_P002	Maize	nucleus, peroxisome, plastid	52.15	29.98
Zm00001d014511_P002	Maize	nucleus	51.84	29.49
PGSC0003DMT400066146	Potato	nucleus	24.23	11.48
PGSC0003DMT400066206	Potato	cytosol, plastid	5.83	5.11
PGSC0003DMT400002636	Potato	extracellular	2.76	2.25

Protein Annotations

KEGG:00230+2.7.7.7	KEGG:00240+2.7.7.7	Gene3D:1.10.150.20	MapMan:14.2.1	Gene3D:2.30.40.20	Gene3D:3.30.70.270
GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	InterPro:IPR001126	UniProt:M0ZKE5	PFAM:PF00817	EnsemblPlantsGene:PGSC0003DMG401001013	PGSC:PGSC0003DMG401001013
EnsemblPlants:PGSC0003DMT400002635	PFscan:PS50173	PANTHER:PTHR11076	PANTHER:PTHR11076:SF11	SUPFAM:SSF56672	UniParc:UPI0002950530
InterPro:UmuC	:	:	:	:	:

Description

Translesion synthesis DNA polymerase eta splice variant [Source:PGSC_GENE;Acc:PGSC0003DMG401001013]

Coordinates

chr1:-:13751385..13756357

Molecular Weight (calculated)

36222.5 Da

IEP (calculated)

8.465

GRAVY (calculated)

-0.310

Length

326 amino acids

Sequence
(BLAST)

001: MPVARPELSD SRVIAHVDMD CFYVQDSSSL KVRSDVRRQV SRFKGMKRND PILANWSYCE SVVEQRKQQS LRGQPTAVVQ YNSWQGGGLI AVSYEARKFG
101: VKRSMRGDEA KQVCPEIHLV QVPVARGKAD LNTYRNAGSE VVSILSRRGR CERASIDEVY LDLTIAAEAM LADNPPECLE TISEEVVKSH VLGLEEVGSD
201: ARENVRHWFT RSDASRRDKL LACGAFIVAE LRLQVLEETE FTCSAGIAHN KMLAKLASGM NKPAQQTVVP FSSISKLLRT LPIKKMKQLG GKLGTSLQID
301: LGVNTVGDLL QFSEEKLQEY YGVNTG

Best Arabidopsis Sequence Match ( AT5G44740.2 )
(BLAST)

001: MPVARPEASD ARVIAHVDMD CFYVQVEQRK QPELRGLPSA VVQYNEWQGG GLIAVSYEAR KCGVKRSMRG DEAKAACPQI QLVQVPVARG KADLNLYRSA
101: GSEVVSILAK SGKCERASID EVYLDLTDAA ESMLADAPPE SLELIDEEVL KSHILGMNRE DGDDFKESVR NWICREDADR RDKLLSCGII IVAELRKQVL
201: KETEFTCSAG IAHNKMLAKL ASGMNKPAQQ TVVPYAAVQE LLSSLPIKKM KQLGGKLGTS LQTDLGVDTV GDLLQFSETK LQEHYGVNTG TWLWNIARGI
301: SGEEVQGRLL PKSHGSGKTF PGPRALKSLS TVQHWLNQLS EELSERLGSD LEQNKRIAST LTLHASAFRS KDSDSHKKFP SKSCPMRYGV TKIQEDAFNL
401: FQAALREYMG SFGIKPQGNK LETWRITGLS VSASKIVDIP SGTSSIMRYF QSQPTVPSRS ADGCVQGNVA MTASASEGCS EQRSTETQAA MPEVDTGVTY
501: TLPNFENQDK DIDLVSEKDV VSCPSNEATD VSTQSESNKG TQTKKIGRKM NNSKEKNRGM PSIVDIFKNY NATPPSKQET QEDSTVSSAS KRAKLSSSSH
601: NSQVNQEVEE SRETDWGYKT DEIDQSVFDE LPVEIQRELR SFLRTNKQFN TGKSKGDGST SSIAHYFPPL NR

Arabidopsis Description

POLHDNA polymerase eta [Source:UniProtKB/Swiss-Prot;Acc:Q8H2D5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.