Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY39396 | Canola | nucleus | 93.76 | 93.62 |
| Bra025107.1-P | Field mustard | nucleus | 89.6 | 87.26 |
| AT5G44740.2 | Thale cress | nucleus | 72.81 | 72.92 |
| Zm00001d046782_P001 | Maize | cytosol | 25.85 | 69.6 |
| Zm00001d019198_P001 | Maize | cytosol | 25.85 | 69.6 |
| PGSC0003DMT400002635 | Potato | cytosol | 33.14 | 68.4 |
| Zm00001d002308_P001 | Maize | cytosol | 25.26 | 68.27 |
| Zm00001d053264_P001 | Maize | cytosol | 34.47 | 66.48 |
| Zm00001d037012_P001 | Maize | cytosol | 18.57 | 57.87 |
| KRH42423 | Soybean | nucleus | 56.31 | 53.91 |
| Os01t0757800-01 | Rice | cytosol | 50.82 | 53.27 |
| EES01500 | Sorghum | nucleus | 49.93 | 52.83 |
| TraesCS3A01G294700.3 | Wheat | nucleus | 49.03 | 52.63 |
| GSMUA_Achr10P... | Banana | cytosol | 50.97 | 52.21 |
| TraesCS3D01G294800.3 | Wheat | nucleus | 48.59 | 51.99 |
| Solyc01g034150.2.1 | Tomato | nucleus | 53.94 | 50.91 |
| TraesCS3B01G329300.8 | Wheat | nucleus | 48.59 | 50.7 |
| HORVU3Hr1G072920.6 | Barley | cytosol, nucleus | 48.59 | 50.31 |
| Zm00001d043404_P001 | Maize | nucleus | 50.52 | 50.3 |
| VIT_01s0011g01180.t01 | Wine grape | nucleus | 56.76 | 49.42 |
| Zm00001d023711_P001 | Maize | nucleus | 13.37 | 39.47 |
| Zm00001d031070_P002 | Maize | cytosol, nucleus, peroxisome | 27.93 | 37.6 |
| PGSC0003DMT400002636 | Potato | extracellular | 21.69 | 36.5 |
| Zm00001d051953_P002 | Maize | nucleus | 25.11 | 30.07 |
| Zm00001d044720_P002 | Maize | nucleus | 23.63 | 29.89 |
| Zm00001d014511_P002 | Maize | nucleus | 25.11 | 29.49 |
| Zm00001d014510_P002 | Maize | nucleus, peroxisome, plastid | 24.37 | 28.92 |
| CDY28119 | Canola | nucleus | 18.13 | 18.48 |
| CDY50970 | Canola | nucleus | 17.53 | 18.04 |
| CDY39397 | Canola | plastid | 17.09 | 10.88 |
| CDY60654 | Canola | plastid | 16.34 | 10.41 |
Protein Annotations
| KEGG:00230+2.7.7.7 | KEGG:00240+2.7.7.7 | Gene3D:1.10.150.20 | MapMan:14.2.1 | Gene3D:2.30.40.20 | Gene3D:3.30.1490.100 |
| Gene3D:3.30.70.270 | GO:A0A078J9H7 | UniProt:A0A078J9H7 | EnsemblPlants:CDY60652 | ProteinID:CDY60652 | ProteinID:CDY60652.1 |
| InterPro:DNA_pol_Y-fam_lit_finger_sf | InterPro:DNA_pol_Y-fam_little_finger | InterPro:DNA_pol_eta/kappa/iota/IV | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003684 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006281 | GO:GO:0006950 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00029891001 | InterPro:IPR001126 | InterPro:IPR036775 |
| PFAM:PF00817 | PFAM:PF11799 | PIRSF:PIRSF036603 | PFscan:PS50173 | PANTHER:PTHR11076 | PANTHER:PTHR11076:SF11 |
| SUPFAM:SSF100879 | SUPFAM:SSF56672 | UniParc:UPI0004EE2AF6 | InterPro:UmuC | SEG:seg | : |
Description
BnaCnng36760DBnaCnng36760D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J9H7]
Coordinates
chrLK033902:-:15551..19253
Molecular Weight (calculated)
74288.0 Da
IEP (calculated)
6.082
GRAVY (calculated)
-0.635
Length
673 amino acids
Sequence
(BLAST)
(BLAST)
001: MPVARPETSD ARVIAHVDMD CFYVQVEQRK QPELRGLPTA VVQYNEWQGG ALIAVSYEAR SCGVKRSMRG EEAKAACPEI QLVQVPVARG KADLNTYRSA
101: GSEVVSILAQ SGKCERASID EVYLDLTDAA ESMLADAPPE GLESIDEEAL KSHILGMSRE DGDDFKESVR DWICRKDADR RDKLLGCGII IVAELRKQVL
201: KETEFSCSAG IAHNKARSDF FSKLASGMNK PAQQTVVPYA AVEELLSSLP IKKMKQLGGK LGTSLQTDLG IDTVSDLLQF SETKLQEHYG INTGTWLWNI
301: ARGISGEEVQ GRLLPKSHGS GKTFPGPRAL RSLSNVQHWL NQLSEELYER LSSDLEQNKR IASTLTLHAS AFRSKDSDSQ KKFPSKSCPL RYGVTKIQED
401: AFNLFQAALR EYMGPFGTKP QGNKKETWRI TGLSVSASKI VDIPSGTSSI MRYFQSQSTI PSSSESGCPQ EHVAMTPSAS ESCSEQKSAE TEAAMPNKDI
501: SITDTSPDLD NSYGNMDMVP EKDASCQSSE AKEFPTQSGT QTKTIGRKIN NSKEKNRGMP SIVDIFKNYN ATPQSQQETR EDSTVSLTSN RGNLSSSTNH
601: SSEVNQEVED RRETEWGYKV GEIDQSVFDE LPYEIQREFR SFLRPNKRPN AGKSKGDGSA SSSIAHYFSP LKR
101: GSEVVSILAQ SGKCERASID EVYLDLTDAA ESMLADAPPE GLESIDEEAL KSHILGMSRE DGDDFKESVR DWICRKDADR RDKLLGCGII IVAELRKQVL
201: KETEFSCSAG IAHNKARSDF FSKLASGMNK PAQQTVVPYA AVEELLSSLP IKKMKQLGGK LGTSLQTDLG IDTVSDLLQF SETKLQEHYG INTGTWLWNI
301: ARGISGEEVQ GRLLPKSHGS GKTFPGPRAL RSLSNVQHWL NQLSEELYER LSSDLEQNKR IASTLTLHAS AFRSKDSDSQ KKFPSKSCPL RYGVTKIQED
401: AFNLFQAALR EYMGPFGTKP QGNKKETWRI TGLSVSASKI VDIPSGTSSI MRYFQSQSTI PSSSESGCPQ EHVAMTPSAS ESCSEQKSAE TEAAMPNKDI
501: SITDTSPDLD NSYGNMDMVP EKDASCQSSE AKEFPTQSGT QTKTIGRKIN NSKEKNRGMP SIVDIFKNYN ATPQSQQETR EDSTVSLTSN RGNLSSSTNH
601: SSEVNQEVED RRETEWGYKV GEIDQSVFDE LPYEIQREFR SFLRPNKRPN AGKSKGDGSA SSSIAHYFSP LKR
001: MPVARPEASD ARVIAHVDMD CFYVQVEQRK QPELRGLPSA VVQYNEWQGG GLIAVSYEAR KCGVKRSMRG DEAKAACPQI QLVQVPVARG KADLNLYRSA
101: GSEVVSILAK SGKCERASID EVYLDLTDAA ESMLADAPPE SLELIDEEVL KSHILGMNRE DGDDFKESVR NWICREDADR RDKLLSCGII IVAELRKQVL
201: KETEFTCSAG IAHNKMLAKL ASGMNKPAQQ TVVPYAAVQE LLSSLPIKKM KQLGGKLGTS LQTDLGVDTV GDLLQFSETK LQEHYGVNTG TWLWNIARGI
301: SGEEVQGRLL PKSHGSGKTF PGPRALKSLS TVQHWLNQLS EELSERLGSD LEQNKRIAST LTLHASAFRS KDSDSHKKFP SKSCPMRYGV TKIQEDAFNL
401: FQAALREYMG SFGIKPQGNK LETWRITGLS VSASKIVDIP SGTSSIMRYF QSQPTVPSRS ADGCVQGNVA MTASASEGCS EQRSTETQAA MPEVDTGVTY
501: TLPNFENQDK DIDLVSEKDV VSCPSNEATD VSTQSESNKG TQTKKIGRKM NNSKEKNRGM PSIVDIFKNY NATPPSKQET QEDSTVSSAS KRAKLSSSSH
601: NSQVNQEVEE SRETDWGYKT DEIDQSVFDE LPVEIQRELR SFLRTNKQFN TGKSKGDGST SSIAHYFPPL NR
101: GSEVVSILAK SGKCERASID EVYLDLTDAA ESMLADAPPE SLELIDEEVL KSHILGMNRE DGDDFKESVR NWICREDADR RDKLLSCGII IVAELRKQVL
201: KETEFTCSAG IAHNKMLAKL ASGMNKPAQQ TVVPYAAVQE LLSSLPIKKM KQLGGKLGTS LQTDLGVDTV GDLLQFSETK LQEHYGVNTG TWLWNIARGI
301: SGEEVQGRLL PKSHGSGKTF PGPRALKSLS TVQHWLNQLS EELSERLGSD LEQNKRIAST LTLHASAFRS KDSDSHKKFP SKSCPMRYGV TKIQEDAFNL
401: FQAALREYMG SFGIKPQGNK LETWRITGLS VSASKIVDIP SGTSSIMRYF QSQPTVPSRS ADGCVQGNVA MTASASEGCS EQRSTETQAA MPEVDTGVTY
501: TLPNFENQDK DIDLVSEKDV VSCPSNEATD VSTQSESNKG TQTKKIGRKM NNSKEKNRGM PSIVDIFKNY NATPPSKQET QEDSTVSSAS KRAKLSSSSH
601: NSQVNQEVEE SRETDWGYKT DEIDQSVFDE LPVEIQRELR SFLRTNKQFN TGKSKGDGST SSIAHYFPPL NR
Arabidopsis Description
POLHDNA polymerase eta [Source:UniProtKB/Swiss-Prot;Acc:Q8H2D5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.