Factsheet for Zm00001d037012_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d046782_P001	Maize	cytosol	84.26	72.8
Zm00001d019198_P001	Maize	cytosol	84.26	72.8
Zm00001d002308_P001	Maize	cytosol	83.33	72.29
Zm00001d053264_P001	Maize	cytosol	81.48	50.43
PGSC0003DMT400002635	Potato	cytosol	58.8	38.96
Zm00001d031070_P002	Maize	cytosol, nucleus, peroxisome	83.8	36.2
Zm00001d023711_P001	Maize	nucleus	34.26	32.46
Zm00001d051953_P002	Maize	nucleus	84.26	32.38
Zm00001d014511_P002	Maize	nucleus	85.19	32.11
Zm00001d014510_P002	Maize	nucleus, peroxisome, plastid	84.26	32.1
Zm00001d044720_P002	Maize	nucleus	77.78	31.58
EES01500	Sorghum	nucleus	80.56	27.36
Zm00001d043404_P001	Maize	nucleus	84.72	27.07
TraesCS3A01G294700.3	Wheat	nucleus	71.3	24.56
TraesCS3D01G294800.3	Wheat	nucleus	70.83	24.32
TraesCS3B01G329300.8	Wheat	nucleus	71.76	24.03
HORVU3Hr1G072920.6	Barley	cytosol, nucleus	72.22	24.0
Os01t0757800-01	Rice	cytosol	71.3	23.99
GSMUA_Achr10P...	Banana	cytosol	65.28	21.46
AT5G44740.2	Thale cress	nucleus	62.04	19.94
Bra025107.1-P	Field mustard	nucleus	60.65	18.96
CDY39396	Canola	nucleus	58.8	18.84
CDY60652	Canola	nucleus	57.87	18.57
KRH42423	Soybean	nucleus	59.72	18.35
Solyc01g034150.2.1	Tomato	nucleus	59.72	18.09
VIT_01s0011g01180.t01	Wine grape	nucleus	60.65	16.95
Zm00001d013729_P003	Maize	nucleus	17.59	5.6
Zm00001d014568_P023	Maize	plastid	18.98	3.63
PGSC0003DMT400002636	Potato	extracellular	4.17	2.25

Protein Annotations

KEGG:00230+2.7.7.7	KEGG:00240+2.7.7.7	MapMan:14.2.1	Gene3D:3.30.70.270	UniProt:A0A1D6LTC7	InterPro:AATF_C
ProteinID:AQK82669.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
InterPro:IPR001126	PFAM:PF00817	PFAM:PF08164	PFscan:PS50173	PANTHER:PTHR11076	PANTHER:PTHR11076:SF11
SUPFAM:SSF56672	UniParc:UPI0008436193	InterPro:UmuC	EnsemblPlantsGene:Zm00001d037012	EnsemblPlants:Zm00001d037012_P001	EnsemblPlants:Zm00001d037012_T001

Description

DNA polymerase eta

Coordinates

chr6:-:108976979..108978500

Molecular Weight (calculated)

23465.6 Da

IEP (calculated)

7.342

GRAVY (calculated)

-0.068

Length

216 amino acids

Sequence
(BLAST)

001: MRGDEAKRVC PGINLVQVPV ARGKADLNLY RSAGAEVVAI LASKGKCERA SIDEVYLDLT DAAKEMLLQA PPDSPEGIFM EAAKSNILGL PADASEKEKN
101: VRAWLCQSEA DYQDKLLTCG AIIVAQLRVR VLEETQFTCS AGIAHNKMLA KLVSGMRKPA QQTVVPSSSV QDLLASLPVK KMYHVHEKIT NFMAPEPMVL
201: PPMAPKLFEN LFGNSS

Best Arabidopsis Sequence Match ( AT5G44740.1 )
(BLAST)

001: MRLKLLVLRF NWFKFLWLVV VSILAKSGKC ERASIDEVYL DLTDAAESML ADAPPESLEL IDEEVLKSHI LGMNREDGDD FKESVRNWIC REDADRRDKL
101: LSCGIIIVAE LRKQVLKETE FTCSAGIAHN KMLAKLASGM NKPAQQTVVP YAAVQELLSS LPIKKMKQLG GKLGTSLQTD LGVDTVGDLL QFSETKLQEH
201: YGVNTGTWLW NIARGISGEE VQGRLLPKSH GSGKTFPGPR ALKSLSTVQH WLNQLSEELS ERLGSDLEQN KRIASTLTLH ASAFRSKDSD SHKKFPSKSC
301: PMRYGVTKIQ EDAFNLFQAA LREYMGSFGI KPQGNKLETW RITGLSVSAS KIVDIPSGTS SIMRYFQSQP TVPSRSADGC VQGNVAMTAS ASEGCSEQRS
401: TETQAAMPEV DTGVTYTLPN FENQDKDIDL VSEKDVVSCP SNEATDVSTQ SESNKGTQTK KIGRKMNNSK EKNRGMPSIV DIFKNYNATP PSKQETQEDS
501: TVSSASKRAK LSSSSHNSQV NQEVEESRET DWGYKTDEID QSVFDELPVE IQRELRSFLR TNKQFNTGKS KGDGSTSSIA HYFPPLNR

Arabidopsis Description

POLHDNA polymerase eta [Source:UniProtKB/Swiss-Prot;Acc:Q8H2D5]
SUBAcon: [golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.