Factsheet for Zm00001d014511_P002

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d051953_P002	Maize	nucleus	91.97	93.77
Zm00001d046782_P001	Maize	cytosol	38.92	89.2
Zm00001d019198_P001	Maize	cytosol	38.92	89.2
Zm00001d002308_P001	Maize	cytosol	38.39	88.35
Zm00001d044720_P002	Maize	nucleus	79.41	85.53
Zm00001d037012_P001	Maize	cytosol	32.11	85.19
Zm00001d031070_P002	Maize	cytosol, nucleus, peroxisome	63.18	72.4
Zm00001d053264_P001	Maize	cytosol	39.09	64.18
Zm00001d014510_P002	Maize	nucleus, peroxisome, plastid	62.48	63.14
PGSC0003DMT400002635	Potato	cytosol	29.49	51.84
Zm00001d023711_P001	Maize	nucleus	20.59	51.75
EES01500	Sorghum	nucleus	39.44	35.53
Zm00001d043404_P001	Maize	nucleus	41.01	34.76
TraesCS3A01G294700.3	Wheat	nucleus	35.6	32.54
TraesCS3D01G294800.3	Wheat	nucleus	35.25	32.11
HORVU3Hr1G072920.6	Barley	cytosol, nucleus	35.95	31.69
TraesCS3B01G329300.8	Wheat	nucleus	35.6	31.63
Os01t0757800-01	Rice	cytosol	35.08	31.31
GSMUA_Achr10P...	Banana	cytosol	31.94	27.85
AT5G44740.2	Thale cress	nucleus	31.41	26.79
CDY39396	Canola	nucleus	30.02	25.52
Bra025107.1-P	Field mustard	nucleus	30.54	25.33
CDY60652	Canola	nucleus	29.49	25.11
KRH42423	Soybean	nucleus	30.37	24.75
Solyc01g034150.2.1	Tomato	nucleus	29.84	23.98
VIT_01s0011g01180.t01	Wine grape	nucleus	31.06	23.03
Zm00001d013729_P003	Maize	nucleus	12.22	10.32
Zm00001d014568_P023	Maize	plastid	14.14	7.17
PGSC0003DMT400002636	Potato	extracellular	2.79	4.0

Protein Annotations

KEGG:00230+2.7.7.7	KEGG:00240+2.7.7.7	Gene3D:1.10.150.20	MapMan:14.2.1	Gene3D:3.30.70.270	UniProt:A0A1D6GTW8
ProteinID:AQK66440.1	InterPro:DNA_pol_eta/kappa/iota/IV	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPR001126	PFAM:PF00817	PIRSF:PIRSF036603
PFscan:PS50173	PANTHER:PTHR11076	PANTHER:PTHR11076:SF11	SUPFAM:SSF56672	UniParc:UPI000844E89C	InterPro:UmuC
EnsemblPlantsGene:Zm00001d014511	EnsemblPlants:Zm00001d014511_P002	EnsemblPlants:Zm00001d014511_T002	:	:	:

Description

DNA polymerase eta

Coordinates

chr5:-:51072776..51081909

Molecular Weight (calculated)

63915.5 Da

IEP (calculated)

7.157

GRAVY (calculated)

-0.339

Length

573 amino acids

Sequence
(BLAST)

001: MGGGGPHSAE LSAQSRRQGA SEVQSLETHH GDRSVTHRFL LYSYHFLRLS DWIATLGAIY EGTCIFDRNC TYLDGKDFVD FGSIDWGRLL RNHGISDSEK
101: VLIFFDDHQS ELKRLKQALK AGFRHLIFED NYDTGTCDHY FLRHIYDPSY IRGIYMDLPN TLDICKQPKI LSEKKVTTLD GFKKAVTAQL KGCEHTSAEI
201: KRSAINGSHR LGMKWDITPP TGIRQAMEMQ AEVERRICAQ VLESEGKKQA QFDHLLYCSR AAEEPGAQGI ANRRGAVQWL ERRRLDCRQL RGSWIWSMRG
301: DEAKRVCPGI NLVQVPVARG KANLNLYRSA GAEVVAILAS KGKCERASID EVYLDLTDAA KEMLLQAPPD SPEGIFMEAA KSNILGLPAD ASEKEKNVRA
401: WLCQSEADYQ DKLLACGAII VAQLRVRVLE ETQFTCSAGI AHNKMLAKLV SGMYKPAQQT VVPSSSVQDL LASLPVKKMK QLGGKLGSSL QDDLGVETIG
501: DLLSFTEEKL QEQYGVNTGA ESCTLGFLLL KPFQGLEKVL DEHMVKVCND QYSLTDKYTD GWLSSDCRTA LFK

Best Arabidopsis Sequence Match ( AT3G16200.1 )
(BLAST)

001: MERGMNNGQS LWHSQSPKTP TTMLDRALSS RRPHSDADLS ASGESGTDES KTKRPHIYLL ASNFLSRIGH QWWPCLILAL LFLVLLFLIS VAFHSHSFVC
101: ISRFDPAARI GFFGLDGLES DFGALGVPWC RSKHGKEVEW TSKDLLKGLE EFVPIYETRP IKNNMYGMGF DHSFGLWFMA RWLKPDMMIE SGAFKGHSTW
201: VLRQAMPDTP MISLTPRHPE KYLRKGPAYV DGNCTYFAGK DFVDFGSVDW KNVLRKHGIT DLSRVIVFFD DHQNELKRLK QALKAGFRHL IFEDNYDTGT
301: GDHYSLRQIC DQSHIRGGGH SCFKDSDEAR MRSKRKKFWE KAVDTEELCG PGETWWGVKG EMRDDFNHTN TPISYNQHFQ NSRYVESILD VYWELPPVAG
401: PSLTHQSRYD PARATPPIVA DGKHRLFQRI GLGRLDKSVF NGYTQMVYLE ISKPGS

Arabidopsis Description

DNA-directed RNA polymerase subunit beta [Source:UniProtKB/TrEMBL;Acc:Q9LU25]
SUBAcon: [vacuole,golgi,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.