Factsheet for Zm00001d031070_P002

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, peroxisome
Any Predictor:	cytosol, mitochondrion, peroxisome
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d046782_P001	Maize	cytosol	43.4	86.8
Zm00001d019198_P001	Maize	cytosol	43.4	86.8
Zm00001d002308_P001	Maize	cytosol	42.8	85.94
Zm00001d037012_P001	Maize	cytosol	36.2	83.8
Zm00001d053264_P001	Maize	cytosol	51.4	73.64
Zm00001d051953_P002	Maize	nucleus	72.6	64.59
Zm00001d014511_P002	Maize	nucleus	72.4	63.18
PGSC0003DMT400002635	Potato	cytosol	38.0	58.28
Zm00001d044720_P002	Maize	nucleus	59.8	56.2
Zm00001d023711_P001	Maize	nucleus	23.2	50.88
Zm00001d014510_P002	Maize	nucleus, peroxisome, plastid	54.4	47.97
Zm00001d043404_P001	Maize	nucleus	53.2	39.35
EES01500	Sorghum	nucleus	50.0	39.31
TraesCS3A01G294700.3	Wheat	nucleus	46.0	36.68
TraesCS3D01G294800.3	Wheat	nucleus	45.6	36.25
HORVU3Hr1G072920.6	Barley	cytosol, nucleus	46.4	35.69
TraesCS3B01G329300.8	Wheat	nucleus	45.8	35.5
Os01t0757800-01	Rice	cytosol	45.4	35.36
GSMUA_Achr10P...	Banana	cytosol	41.0	31.2
AT5G44740.2	Thale cress	nucleus	39.6	29.46
CDY39396	Canola	nucleus	38.2	28.34
Bra025107.1-P	Field mustard	nucleus	38.8	28.08
CDY60652	Canola	nucleus	37.6	27.93
KRH42423	Soybean	nucleus	38.0	27.03
Solyc01g034150.2.1	Tomato	nucleus	38.4	26.93
VIT_01s0011g01180.t01	Wine grape	nucleus	40.0	25.87
Zm00001d013729_P003	Maize	nucleus	15.6	11.5
Zm00001d014568_P023	Maize	plastid	18.2	8.06
PGSC0003DMT400002636	Potato	extracellular	3.2	4.0

Protein Annotations

KEGG:00230+2.7.7.7	KEGG:00240+2.7.7.7	Gene3D:1.10.150.20	MapMan:14.2.1	Gene3D:2.30.40.20	Gene3D:3.30.70.270
UniProt:A0A1D6KGA5	InterPro:DNA_pol_eta/kappa/iota/IV	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPR001126	ProteinID:ONM02115.1	PFAM:PF00817
PIRSF:PIRSF036603	PFscan:PS50173	PANTHER:PTHR11076	PANTHER:PTHR11076:SF11	SUPFAM:SSF56672	UniParc:UPI000843C754
InterPro:UmuC	EnsemblPlantsGene:Zm00001d031070	EnsemblPlants:Zm00001d031070_P002	EnsemblPlants:Zm00001d031070_T002	SEG:seg	:

Description

DNA polymerase eta

Coordinates

chr1:-:175958631..175968210

Molecular Weight (calculated)

54947.0 Da

IEP (calculated)

7.046

GRAVY (calculated)

-0.198

Length

500 amino acids

Sequence
(BLAST)

001: MGGGGPHSAE LSAQSRRQGA SEVQSLETHH GEGTCIFDRN CTYLDGKDFV DFGSIDWGRL LRNHGISDSE KVLIFFDDHQ SELKRLKQAL KAGFRHLIFE
101: DNYDTGTCDH YFLRHIYDPS YIRGIYMDLP NTLDICKQPK ILSEKKAKLS SIVQDTGTFA LALSLLASLI ICFTAVEQRR NPALRGQPTV VVQYNGWKGG
201: GLIAVSYEAR GFGVKRRVPF ISSSMHGDEA KRVCPGINLV QVPVARGKAN LNLYRSAGAE VVVILASKGK CERASIDEVY LDLTDAAKEM LLQAPPDSPE
301: GIFMEATKSN ILGLPADASE KEKNVRAWLC QSEADYQDKL LACGAIIVAQ LRVRVLEETQ FTCSAGIAHN KMLAKLVSGM YKPAQQTVVP SSSVQDLLAS
401: LPVKKMKQLG GKLGSSLQDN LGVETIGDLL SFTEEKLQEQ YGVNTGAESC TLGFLLLKPF QGLEKVLDGH MVKVCNDQYS LTDKYTDGWL SSDCRTTLFK

Best Arabidopsis Sequence Match ( AT3G16200.1 )
(BLAST)

001: MERGMNNGQS LWHSQSPKTP TTMLDRALSS RRPHSDADLS ASGESGTDES KTKRPHIYLL ASNFLSRIGH QWWPCLILAL LFLVLLFLIS VAFHSHSFVC
101: ISRFDPAARI GFFGLDGLES DFGALGVPWC RSKHGKEVEW TSKDLLKGLE EFVPIYETRP IKNNMYGMGF DHSFGLWFMA RWLKPDMMIE SGAFKGHSTW
201: VLRQAMPDTP MISLTPRHPE KYLRKGPAYV DGNCTYFAGK DFVDFGSVDW KNVLRKHGIT DLSRVIVFFD DHQNELKRLK QALKAGFRHL IFEDNYDTGT
301: GDHYSLRQIC DQSHIRGGGH SCFKDSDEAR MRSKRKKFWE KAVDTEELCG PGETWWGVKG EMRDDFNHTN TPISYNQHFQ NSRYVESILD VYWELPPVAG
401: PSLTHQSRYD PARATPPIVA DGKHRLFQRI GLGRLDKSVF NGYTQMVYLE ISKPGS

Arabidopsis Description

DNA-directed RNA polymerase subunit beta [Source:UniProtKB/TrEMBL;Acc:Q9LU25]
SUBAcon: [vacuole,golgi,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.