Factsheet for Zm00001d044720_P002

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d051953_P002	Maize	nucleus	90.41	85.59
Zm00001d046782_P001	Maize	cytosol	39.29	83.6
Zm00001d019198_P001	Maize	cytosol	39.29	83.6
Zm00001d002308_P001	Maize	cytosol	38.72	82.73
Zm00001d014511_P002	Maize	nucleus	85.53	79.41
Zm00001d037012_P001	Maize	cytosol	31.58	77.78
Zm00001d053264_P001	Maize	cytosol	39.85	60.74
Zm00001d031070_P002	Maize	cytosol, nucleus, peroxisome	56.2	59.8
Zm00001d014510_P002	Maize	nucleus, peroxisome, plastid	56.02	52.56
Zm00001d023711_P001	Maize	nucleus	21.99	51.32
PGSC0003DMT400002635	Potato	cytosol	30.83	50.31
EES01500	Sorghum	nucleus	39.47	33.02
Zm00001d043404_P001	Maize	nucleus	40.79	32.1
TraesCS3A01G294700.3	Wheat	nucleus	37.03	31.42
TraesCS3D01G294800.3	Wheat	nucleus	36.65	31.0
HORVU3Hr1G072920.6	Barley	cytosol, nucleus	37.22	30.46
TraesCS3B01G329300.8	Wheat	nucleus	36.84	30.39
Os01t0757800-01	Rice	cytosol	36.65	30.37
GSMUA_Achr10P...	Banana	cytosol	32.89	26.64
AT5G44740.2	Thale cress	nucleus	31.58	25.0
CDY39396	Canola	nucleus	30.45	24.04
Bra025107.1-P	Field mustard	nucleus	31.2	24.02
CDY60652	Canola	nucleus	29.89	23.63
KRH42423	Soybean	nucleus	31.2	23.61
Solyc01g034150.2.1	Tomato	nucleus	30.45	22.72
VIT_01s0011g01180.t01	Wine grape	nucleus	31.77	21.86
Zm00001d013729_P003	Maize	nucleus	11.09	8.7
Zm00001d014568_P023	Maize	plastid	13.91	6.55
PGSC0003DMT400002636	Potato	extracellular	1.32	1.75

Protein Annotations

KEGG:00230+2.7.7.7	KEGG:00240+2.7.7.7	Gene3D:1.10.150.20	MapMan:14.2.1	Gene3D:2.30.40.20	Gene3D:3.30.70.270
UniProt:A0A1D6NQY1	ProteinID:AQL00729.1	InterPro:DNA_pol_eta/kappa/iota/IV	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPR001126	PFAM:PF00817
PIRSF:PIRSF036603	PFscan:PS50173	PANTHER:PTHR11076	PANTHER:PTHR11076:SF11	SUPFAM:SSF56672	UniParc:UPI0008433190
InterPro:UmuC	EnsemblPlantsGene:Zm00001d044720	EnsemblPlants:Zm00001d044720_P002	EnsemblPlants:Zm00001d044720_T002	:	:

Description

DNA polymerase eta

Coordinates

chr9:-:177328..186929

Molecular Weight (calculated)

59527.5 Da

IEP (calculated)

7.466

GRAVY (calculated)

-0.303

Length

532 amino acids

Sequence
(BLAST)

001: MGGGGPHSVE LSAQSRRQGA SEVQSLETHH GDRSVTHRFL LYSYHFLRLS DWIATLGAIY EGTCIFDRNC TYLDGKDFVD FGSIDWGRLL RNHGISDSEK
101: VLIFFDDHQS ELKRLKQALK AGFRHIIFED NYDTGTCDHY FLRHIYDPSY IRGIYMDLPN TLDICKQPKI LSEKKVTTLD GFKKAVTAQL KGCEHTSAEI
201: KRSAINGSHR LGMKWDITPP TGIRQAMEMQ AEVERRICAQ FDHLLYCSRA AEELGAQGTT NRRGAVQWLE RRRLDCRQLR GSWIWSMRGD EAKRVCPGIN
301: LVQVPVARGK ANLNLYRSAG VEVVAILASK GKCERASIDE VYLDLTDAAK EMLLQAPLDS PEGIFMEATK SNILGLPAAM IYSECQREGK ECEGMLCQSE
401: ADYQDKLLAC GAIIVAQLRV KVLEETQFTC SAGIAHNKML AKLVSGMYKP AQQTVVPSSS VQDLLASLPV KKMKQLGGKL GSSLQDDLGV ETIGDLLSFT
501: EEKLQEQYGV NTGVWKRFWT DTWSKSAMIS TV

Best Arabidopsis Sequence Match ( AT5G44740.1 )
(BLAST)

001: MRLKLLVLRF NWFKFLWLVV VSILAKSGKC ERASIDEVYL DLTDAAESML ADAPPESLEL IDEEVLKSHI LGMNREDGDD FKESVRNWIC REDADRRDKL
101: LSCGIIIVAE LRKQVLKETE FTCSAGIAHN KMLAKLASGM NKPAQQTVVP YAAVQELLSS LPIKKMKQLG GKLGTSLQTD LGVDTVGDLL QFSETKLQEH
201: YGVNTGTWLW NIARGISGEE VQGRLLPKSH GSGKTFPGPR ALKSLSTVQH WLNQLSEELS ERLGSDLEQN KRIASTLTLH ASAFRSKDSD SHKKFPSKSC
301: PMRYGVTKIQ EDAFNLFQAA LREYMGSFGI KPQGNKLETW RITGLSVSAS KIVDIPSGTS SIMRYFQSQP TVPSRSADGC VQGNVAMTAS ASEGCSEQRS
401: TETQAAMPEV DTGVTYTLPN FENQDKDIDL VSEKDVVSCP SNEATDVSTQ SESNKGTQTK KIGRKMNNSK EKNRGMPSIV DIFKNYNATP PSKQETQEDS
501: TVSSASKRAK LSSSSHNSQV NQEVEESRET DWGYKTDEID QSVFDELPVE IQRELRSFLR TNKQFNTGKS KGDGSTSSIA HYFPPLNR

Arabidopsis Description

POLHDNA polymerase eta [Source:UniProtKB/Swiss-Prot;Acc:Q8H2D5]
SUBAcon: [golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.