Factsheet for Zm00001d051953_P002

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d014511_P002	Maize	nucleus	93.77	91.97
Zm00001d044720_P002	Maize	nucleus	85.59	90.41
Zm00001d046782_P001	Maize	cytosol	39.68	89.2
Zm00001d019198_P001	Maize	cytosol	39.68	89.2
Zm00001d002308_P001	Maize	cytosol	39.15	88.35
Zm00001d037012_P001	Maize	cytosol	32.38	84.26
Zm00001d031070_P002	Maize	cytosol, nucleus, peroxisome	64.59	72.6
Zm00001d053264_P001	Maize	cytosol	39.86	64.18
Zm00001d014510_P002	Maize	nucleus, peroxisome, plastid	57.3	56.79
PGSC0003DMT400002635	Potato	cytosol	30.07	51.84
Zm00001d023711_P001	Maize	nucleus	21.0	51.75
EES01500	Sorghum	nucleus	40.04	35.38
Zm00001d043404_P001	Maize	nucleus	41.64	34.62
TraesCS3A01G294700.3	Wheat	nucleus	36.48	32.7
TraesCS3D01G294800.3	Wheat	nucleus	36.12	32.27
HORVU3Hr1G072920.6	Barley	cytosol, nucleus	36.83	31.85
TraesCS3B01G329300.8	Wheat	nucleus	36.48	31.78
Os01t0757800-01	Rice	cytosol	36.12	31.62
GSMUA_Achr10P...	Banana	cytosol	32.56	27.85
AT5G44740.2	Thale cress	nucleus	31.85	26.64
CDY39396	Canola	nucleus	30.61	25.52
Bra025107.1-P	Field mustard	nucleus	31.14	25.33
CDY60652	Canola	nucleus	30.07	25.11
KRH42423	Soybean	nucleus	30.96	24.75
Solyc01g034150.2.1	Tomato	nucleus	30.43	23.98
VIT_01s0011g01180.t01	Wine grape	nucleus	31.85	23.16
Zm00001d013729_P003	Maize	nucleus	12.28	10.18
Zm00001d014568_P023	Maize	plastid	14.77	7.35
PGSC0003DMT400002636	Potato	extracellular	2.85	4.0

Protein Annotations

KEGG:00230+2.7.7.7	KEGG:00240+2.7.7.7	Gene3D:1.10.150.20	MapMan:14.2.1	Gene3D:3.30.70.270	UniProt:A0A1D6QB52
ProteinID:AQK55543.1	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	InterPro:IPR001126	PFAM:PF00817	PFscan:PS50173	PANTHER:PTHR11076
PANTHER:PTHR11076:SF11	SUPFAM:SSF56672	UniParc:UPI000842C0BE	InterPro:UmuC	EnsemblPlantsGene:Zm00001d051953	EnsemblPlants:Zm00001d051953_P002
EnsemblPlants:Zm00001d051953_T002	:	:	:	:	:

Description

DNA polymerase eta

Coordinates

chr4:-:175176483..175186078

Molecular Weight (calculated)

62739.1 Da

IEP (calculated)

7.318

GRAVY (calculated)

-0.340

Length

562 amino acids

Sequence
(BLAST)

001: MGGGGPHSAE LSAQSRRQGA SEVQSLETHH GDRSVTHRFL LYSYHFLRLS DWIATLGAIY EGTYIFDRNC TYLDGKDFVD FGSIDWGRLL RNHGISDSEK
101: VLIFFDDHQS ELKRLKQALK AGFRHLIFED NYDTGTCDHY FLRHIYDPSY IRGIYMDLPN TLDICKQPKI LSDKKVTTLD GFKKAVTAQL KGCEHTSAEI
201: KRSAINGSHR LGMKWDITPP TGIRQAMEMQ AEVERRICAQ FDHLLYCSRA AEEPGAQGTA NRRGAVQWLE RRRLDCRQLR GSWIWSMRGD EAKRVCPGIN
301: LVQVPVARGK ANLNLYRSAG AEVVAILASK GKCERASIDE VYLDLTDAAK EMLLQAPPDS PEGIFMEATK SNILGLPADA SEKEKNVRAW LCQSEADYQD
401: KLLACGAIIV AQLRVRVLEE TQFTCSAGIA HNKMLAKLVS GMYKPAQQTV VPSSSVQDLL ASLPVKKMKQ LGGKLGSSLQ DDLGVETIGD LLSFTEEKLQ
501: EQYGVNTGAE SCTLGIFLLK PFQGLEKVLD GHMVKVCNDQ YSLTDKYTDG WLSSDCRTTL FK

Best Arabidopsis Sequence Match ( AT5G44740.1 )
(BLAST)

001: MRLKLLVLRF NWFKFLWLVV VSILAKSGKC ERASIDEVYL DLTDAAESML ADAPPESLEL IDEEVLKSHI LGMNREDGDD FKESVRNWIC REDADRRDKL
101: LSCGIIIVAE LRKQVLKETE FTCSAGIAHN KMLAKLASGM NKPAQQTVVP YAAVQELLSS LPIKKMKQLG GKLGTSLQTD LGVDTVGDLL QFSETKLQEH
201: YGVNTGTWLW NIARGISGEE VQGRLLPKSH GSGKTFPGPR ALKSLSTVQH WLNQLSEELS ERLGSDLEQN KRIASTLTLH ASAFRSKDSD SHKKFPSKSC
301: PMRYGVTKIQ EDAFNLFQAA LREYMGSFGI KPQGNKLETW RITGLSVSAS KIVDIPSGTS SIMRYFQSQP TVPSRSADGC VQGNVAMTAS ASEGCSEQRS
401: TETQAAMPEV DTGVTYTLPN FENQDKDIDL VSEKDVVSCP SNEATDVSTQ SESNKGTQTK KIGRKMNNSK EKNRGMPSIV DIFKNYNATP PSKQETQEDS
501: TVSSASKRAK LSSSSHNSQV NQEVEESRET DWGYKTDEID QSVFDELPVE IQRELRSFLR TNKQFNTGKS KGDGSTSSIA HYFPPLNR

Arabidopsis Description

POLHDNA polymerase eta [Source:UniProtKB/Swiss-Prot;Acc:Q8H2D5]
SUBAcon: [golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.