Factsheet for Zm00001d013729_P003

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG38024	Sorghum	nucleus	79.5	85.28
TraesCS4A01G234800.1	Wheat	nucleus	69.47	72.02
HORVU4Hr1G013680.2	Barley	nucleus	68.88	71.3
TraesCS4B01G080200.1	Wheat	nucleus	68.14	70.53
Os03t0616300-01	Rice	nucleus	64.16	70.5
GSMUA_Achr5P01740_001	Banana	nucleus	55.46	58.2
Solyc01g107010.2.1	Tomato	nucleus	55.6	54.8
PGSC0003DMT400066146	Potato	nucleus	55.31	54.51
CDY50970	Canola	nucleus	51.62	53.52
KRH27580	Soybean	nucleus	53.39	53.39
AT1G49980.1	Thale cress	nucleus	52.65	53.2
CDY28119	Canola	nucleus	51.03	52.42
VIT_03s0091g00860.t01	Wine grape	nucleus	53.83	51.85
KRH77930	Soybean	cytosol	47.79	51.59
Bra018821.1-P	Field mustard	nucleus	51.47	51.32
Zm00001d053264_P001	Maize	cytosol	11.5	22.35
Zm00001d019198_P001	Maize	cytosol	7.37	20.0
Zm00001d046782_P001	Maize	cytosol	7.37	20.0
Zm00001d002308_P001	Maize	cytosol	7.08	19.28
Zm00001d023711_P001	Maize	nucleus	6.34	18.86
Zm00001d037012_P001	Maize	cytosol	5.6	17.59
Zm00001d031070_P002	Maize	cytosol, nucleus, peroxisome	11.5	15.6
Zm00001d043404_P001	Maize	nucleus	15.19	15.24
Zm00001d051953_P002	Maize	nucleus	10.18	12.28
Zm00001d014511_P002	Maize	nucleus	10.32	12.22
Zm00001d014568_P023	Maize	plastid	19.47	11.69
Zm00001d044720_P002	Maize	nucleus	8.7	11.09
Zm00001d014510_P002	Maize	nucleus, peroxisome, plastid	8.55	10.23

Protein Annotations

KEGG:00230+2.7.7.7	KEGG:00240+2.7.7.7	Gene3D:1.10.150.810	MapMan:14.2.3	Gene3D:2.30.40.20	Gene3D:3.30.1490.100
Gene3D:3.30.70.270	UniProt:A0A1D6GLR1	ProteinID:AQK64250.1	ncoils:Coil	InterPro:DNA_pol_Y-fam_lit_finger_sf	InterPro:DNA_pol_Y-fam_little_finger
InterPro:DNA_pol_eta/kappa/iota/IV	InterPro:DNApol_IV	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003684
GO:GO:0003697	GO:GO:0003824	GO:GO:0003887	GO:GO:0005488	GO:GO:0005575	GO:GO:0006139
GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016020	GO:GO:0016740	GO:GO:0071897	InterPro:IPR001126	InterPro:IPR036775
HAMAP:MF_01113	PFAM:PF00817	PFAM:PF11799	PIRSF:PIRSF036603	PFscan:PS50173	PANTHER:PTHR11076
PANTHER:PTHR11076:SF33	SUPFAM:SSF100879	SUPFAM:SSF56672	UniParc:UPI000843B2C7	InterPro:UmuC	EnsemblPlantsGene:Zm00001d013729
EnsemblPlants:Zm00001d013729_P003	EnsemblPlants:Zm00001d013729_T003	SEG:seg	:	:	:

Description

DNA/RNA polymerases superfamily protein

Coordinates

chr5:-:18758823..18767106

Molecular Weight (calculated)

75117.9 Da

IEP (calculated)

6.257

GRAVY (calculated)

-0.481

Length

678 amino acids

Sequence
(BLAST)

001: MSAAAGTPPE DGGDRPWQSY HTAYTNAKAG MEGVDKEKVQ KVIYEMSKGS KYFENEQRKE AATKQKIEHL RAQCAVLTDN DISHFQKVAD KKMLELEASR
101: DLSKIWLHTD MDAFYAAVET LENPSLKGKP LAVGSMSMIA TASYEARKFG VRAAMPGFIG CKLCPDLVFV PPNFERYTHY SELTRKVFQR YDPNFIATSL
201: DEAYLNITNV CIERGITGEE VAIELRSAIH QETGLTCSAG VAPNRMIAKV CSDINKPNGQ FILPNDREAV LTFVSTLPIR KIGGIGKVTE QMLHQVLGIS
301: TCQEMLQKAA FLCALFSESS ADFFLSVGLG LGGTETPEQR QRKSISCERT FTATNDSSLL FKKLASLAEN LSDDLQKEGF KGKTLTLKLK TADFEVRTRA
401: VTTRNYIDSK EDILVYATKL IKAEMPISLR LMGLRMSQLH DEKDDPSTST QKTLDIFFRS SNSNSNGNGT TVQRITNSPG QDNDSISLTT KEEYLAPDAG
501: TSVSTGQQDF FLHDEICFIP EQQRSLDNDT KEAVLSDPLG GTKSDDVSSS AKHVKLAFHK VTPTKKLDEP DPLISPKAVS SSSKPDQQSW IDGYICSICG
601: FELPPGFEEE RLEHSDFHLA ETLQQEEAVD GTRHISNESW VAERPRSTAP TPKKKLKSSK EGKHIPIDSF FTKCNKSP

Best Arabidopsis Sequence Match ( AT1G49980.8 )
(BLAST)

001: MDNGESSSTN NSSRPWESYN TVFTNAKAGM EGVDKEKVQR VVYEMSKGSK YFQNEERKEA LMKQKIEHMR DRCAKLSSLD LSNYQKVVDK RILELEATRD
101: LSRIWLHVDM DAFYAAVETL SDPSIKGKPM AVGGLSMIST ANYEARKFGV RAAMPGFIAR KLCPDLIFVP VDFTKYTHYS DLTRKVFRNY DPHFIAGSLD
201: EAYLDITEVC RERGLSGGEI AEELRSSVYS ETGLTCSAGV AANRLLAKVC SDINKPNGQF VLQNDRSTVM TFVSFLPVRK IGGIGKVTEH ILKDALGIKT
301: CEEMVQKGSL LYALFSQSSA DFFLSVGLGL GGTNTPQVRS RKSISSERTF AATGDERLLY SKLDELAEML SHDMKKEGLT ARTLTLKLKT ASFEIRSRAV
401: SLQRYTCSSD DILKHATKLL KAELPVSVRL IGLRMSQFVE EIRNSDPSQG TITKFIVQKD SSRQAQDLDD NDSFDLDANK NCLSNDESGN VSFGSHETSS
501: AHLKDVVEYE ERSQIDSGKV IPNQECMKKE ERLQILEGDS LLKKYKECKP DTSHSMNDNS NATEAVSVFP QTEPLYWIDG YKCVLCGIEL PPSFVEERQE
601: HSDFHLAQRL QNEETGSSSS TTPSKRRILG KEKVNSKPKK QKPDQKDSSK HIPIHAFFTK SNQNS

Arabidopsis Description

POLKDNA polymerase kappa [Source:UniProtKB/Swiss-Prot;Acc:Q6JDV7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.