Factsheet for Zm00001d002308_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d046782_P001	Maize	cytosol	98.39	98.0
Zm00001d019198_P001	Maize	cytosol	98.39	98.0
Zm00001d037012_P001	Maize	cytosol	72.29	83.33
Zm00001d053264_P001	Maize	cytosol	95.18	67.91
PGSC0003DMT400002635	Potato	cytosol	70.28	53.68
Zm00001d023711_P001	Maize	nucleus	45.78	50.0
Zm00001d031070_P002	Maize	cytosol, nucleus, peroxisome	85.94	42.8
Zm00001d051953_P002	Maize	nucleus	88.35	39.15
Zm00001d014510_P002	Maize	nucleus, peroxisome, plastid	88.75	38.98
Zm00001d044720_P002	Maize	nucleus	82.73	38.72
Zm00001d014511_P002	Maize	nucleus	88.35	38.39
EES01500	Sorghum	nucleus	93.17	36.48
Zm00001d043404_P001	Maize	nucleus	96.79	35.65
TraesCS3A01G294700.3	Wheat	nucleus	83.13	33.01
TraesCS3D01G294800.3	Wheat	nucleus	82.33	32.59
Os01t0757800-01	Rice	cytosol	83.94	32.55
HORVU3Hr1G072920.6	Barley	cytosol, nucleus	83.94	32.15
TraesCS3B01G329300.8	Wheat	nucleus	83.13	32.09
GSMUA_Achr10P...	Banana	cytosol	75.5	28.61
AT5G44740.2	Thale cress	nucleus	72.29	26.79
CDY39396	Canola	nucleus	69.48	25.67
Bra025107.1-P	Field mustard	nucleus	71.08	25.62
CDY60652	Canola	nucleus	68.27	25.26
KRH42423	Soybean	nucleus	69.48	24.61
Solyc01g034150.2.1	Tomato	nucleus	69.08	24.12
VIT_01s0011g01180.t01	Wine grape	nucleus	70.28	22.64
Zm00001d013729_P003	Maize	nucleus	19.28	7.08
Zm00001d014568_P023	Maize	plastid	21.69	4.78
PGSC0003DMT400002636	Potato	extracellular	2.01	1.25

Protein Annotations

KEGG:00230+2.7.7.7	KEGG:00240+2.7.7.7	Gene3D:1.10.150.20	EntrezGene:103648396	MapMan:14.2.1	Gene3D:3.30.70.270
UniProt:A0A1D6DZC9	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	InterPro:IPR001126	ProteinID:ONM13882.1	PFAM:PF00817	PFscan:PS50173
PANTHER:PTHR11076	PANTHER:PTHR11076:SF11	SUPFAM:SSF56672	UniParc:UPI0004DE7B97	InterPro:UmuC	EnsemblPlantsGene:Zm00001d002308
EnsemblPlants:Zm00001d002308_P001	EnsemblPlants:Zm00001d002308_T001	:	:	:	:

Description

DNA polymerase eta

Coordinates

chr2:+:10007708..10009299

Molecular Weight (calculated)

26765.3 Da

IEP (calculated)

4.875

GRAVY (calculated)

-0.122

Length

249 amino acids

Sequence
(BLAST)

001: MPVARPEPQE PRVIAHVDMD CFYVQGPCAG DEAKRVCSGI NLVQVPVARG KADLNLYRSA GAEVVAILAS KGKCERASID EVYLDLTDAA KEMLLQAPPD
101: SPEGIFMEAA KSNILGLPAD ASEKEKNVRA WLCQSEADYQ DKLLPCGAII VAQLRVRVLE ETQFTCSAGI AHNKMLAKLV SGMHKPAQQT VVPSSSVQDL
201: LASLPVKKMK QLGGKLGSSL QDDLGVETIG DLLSFTEEKL QEQYGVNTG

Best Arabidopsis Sequence Match ( AT5G44740.1 )
(BLAST)

001: MRLKLLVLRF NWFKFLWLVV VSILAKSGKC ERASIDEVYL DLTDAAESML ADAPPESLEL IDEEVLKSHI LGMNREDGDD FKESVRNWIC REDADRRDKL
101: LSCGIIIVAE LRKQVLKETE FTCSAGIAHN KMLAKLASGM NKPAQQTVVP YAAVQELLSS LPIKKMKQLG GKLGTSLQTD LGVDTVGDLL QFSETKLQEH
201: YGVNTGTWLW NIARGISGEE VQGRLLPKSH GSGKTFPGPR ALKSLSTVQH WLNQLSEELS ERLGSDLEQN KRIASTLTLH ASAFRSKDSD SHKKFPSKSC
301: PMRYGVTKIQ EDAFNLFQAA LREYMGSFGI KPQGNKLETW RITGLSVSAS KIVDIPSGTS SIMRYFQSQP TVPSRSADGC VQGNVAMTAS ASEGCSEQRS
401: TETQAAMPEV DTGVTYTLPN FENQDKDIDL VSEKDVVSCP SNEATDVSTQ SESNKGTQTK KIGRKMNNSK EKNRGMPSIV DIFKNYNATP PSKQETQEDS
501: TVSSASKRAK LSSSSHNSQV NQEVEESRET DWGYKTDEID QSVFDELPVE IQRELRSFLR TNKQFNTGKS KGDGSTSSIA HYFPPLNR

Arabidopsis Description

POLHDNA polymerase eta [Source:UniProtKB/Swiss-Prot;Acc:Q8H2D5]
SUBAcon: [golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.