Factsheet for Zm00001d043404_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d046782_P001	Maize	cytosol	36.24	98.0
Zm00001d019198_P001	Maize	cytosol	36.24	98.0
Zm00001d002308_P001	Maize	cytosol	35.65	96.79
Zm00001d053264_P001	Maize	cytosol	47.34	91.69
Zm00001d037012_P001	Maize	cytosol	27.07	84.72
EES01500	Sorghum	nucleus	77.37	82.23
Os01t0757800-01	Rice	cytosol	66.72	70.25
TraesCS3A01G294700.3	Wheat	nucleus	65.09	70.18
TraesCS3D01G294800.3	Wheat	nucleus	63.46	68.2
HORVU3Hr1G072920.6	Barley	cytosol, nucleus	65.53	68.15
TraesCS3B01G329300.8	Wheat	nucleus	63.02	66.05
PGSC0003DMT400002635	Potato	cytosol	31.51	65.34
GSMUA_Achr10P...	Banana	cytosol	53.99	55.56
Zm00001d031070_P002	Maize	cytosol, nucleus, peroxisome	39.35	53.2
Zm00001d023711_P001	Maize	nucleus	17.75	52.63
AT5G44740.2	Thale cress	nucleus	51.78	52.08
CDY39396	Canola	nucleus	51.04	51.19
Bra025107.1-P	Field mustard	nucleus	51.92	50.8
CDY60652	Canola	nucleus	50.3	50.52
KRH42423	Soybean	nucleus	51.92	49.93
Solyc01g034150.2.1	Tomato	nucleus	52.07	49.37
VIT_01s0011g01180.t01	Wine grape	nucleus	52.81	46.18
Zm00001d051953_P002	Maize	nucleus	34.62	41.64
Zm00001d014511_P002	Maize	nucleus	34.76	41.01
Zm00001d044720_P002	Maize	nucleus	32.1	40.79
Zm00001d014510_P002	Maize	nucleus, peroxisome, plastid	34.17	40.74
PGSC0003DMT400002636	Potato	extracellular	20.86	35.25
Zm00001d013729_P003	Maize	nucleus	15.24	15.19
Zm00001d014568_P023	Maize	plastid	17.6	10.54

Protein Annotations

KEGG:00230+2.7.7.7	KEGG:00240+2.7.7.7	Gene3D:1.10.150.20	EntrezGene:103651191	MapMan:14.2.1	Gene3D:2.30.40.20
Gene3D:3.30.1490.100	Gene3D:3.30.70.270	UniProt:A0A1D6NB48	InterPro:DNA_pol_Y-fam_lit_finger_sf	InterPro:DNA_pol_Y-fam_little_finger	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003684	GO:GO:0005488	GO:GO:0006139	GO:GO:0006259
GO:GO:0006281	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPR001126
InterPro:IPR036775	ProteinID:ONM37766.1	PFAM:PF00817	PFAM:PF11799	PFscan:PS50173	PANTHER:PTHR11076
PANTHER:PTHR11076:SF11	SUPFAM:SSF100879	SUPFAM:SSF56672	UniParc:UPI0008439790	InterPro:UmuC	EnsemblPlantsGene:Zm00001d043404
EnsemblPlants:Zm00001d043404_P001	EnsemblPlants:Zm00001d043404_T001	:	:	:	:

Description

DNA polymerase eta

Coordinates

chr3:-:198914206..198921192

Molecular Weight (calculated)

73866.5 Da

IEP (calculated)

7.283

GRAVY (calculated)

-0.446

Length

676 amino acids

Sequence
(BLAST)

001: MPVARPEPQE PRVIAHVDMD CFYVQVEQRR NPALRGQPTA VVQYNGWKGG GLIAVSYEAR GFGVKRRVPF LSSSMRGDEA KRVCPGINLV QVPVARGKAD
101: LNLYRSAGAE VVAILASKGK CERASIDEVY LDLTDAANEM VLQAPPDSPE GIFMEAAKSN ILGLPADASE KEKNVRAWLC QSEADYQDKL LACGAIIVAQ
201: LRVRVLEETQ FTCSAGIAHN KVYNESYYFA VLRKSAKMLA KLVSGMHKPA QQTVVPSSSV QDLLASLPVK KMKQLGGKLG SSLQDDLGVE TIGDLLSFTE
301: EKLQEQYGVN TGTWLWKTAR GISGEEVEDR LLPKSHGCGK TFPGPRALKY SASVKGWLDQ LCEELSERIQ SDLNQNKRIA QTLTLHARAF KKNEHDSMKK
401: FPSKSCPLRY GTGKIQEDAM RLFESGLHEF LESQNTGWGI TSLSVTASKI FDIPSGTSSI LRYIKGPSSA AALTIPDSPS SAAALAIPDS SFVPEDPSLD
501: NDVFVEPIHE EECQPSTSEK EDDNNTHSAS AFSAKKCRAN EEKRISKKLP GVQGTSSILK FLSRGQSTLH EKRKSDGLIC SHQGLLDCPG SSSEAYKAGA
601: HNVPAEAEDR NNTNSCAEPS GSNTWTFNLQ DIDPAVVEEL PPEIQREIQG WVRPSKHPIT KRRGSTISSY FPPARS

Best Arabidopsis Sequence Match ( AT5G44740.2 )
(BLAST)

001: MPVARPEASD ARVIAHVDMD CFYVQVEQRK QPELRGLPSA VVQYNEWQGG GLIAVSYEAR KCGVKRSMRG DEAKAACPQI QLVQVPVARG KADLNLYRSA
101: GSEVVSILAK SGKCERASID EVYLDLTDAA ESMLADAPPE SLELIDEEVL KSHILGMNRE DGDDFKESVR NWICREDADR RDKLLSCGII IVAELRKQVL
201: KETEFTCSAG IAHNKMLAKL ASGMNKPAQQ TVVPYAAVQE LLSSLPIKKM KQLGGKLGTS LQTDLGVDTV GDLLQFSETK LQEHYGVNTG TWLWNIARGI
301: SGEEVQGRLL PKSHGSGKTF PGPRALKSLS TVQHWLNQLS EELSERLGSD LEQNKRIAST LTLHASAFRS KDSDSHKKFP SKSCPMRYGV TKIQEDAFNL
401: FQAALREYMG SFGIKPQGNK LETWRITGLS VSASKIVDIP SGTSSIMRYF QSQPTVPSRS ADGCVQGNVA MTASASEGCS EQRSTETQAA MPEVDTGVTY
501: TLPNFENQDK DIDLVSEKDV VSCPSNEATD VSTQSESNKG TQTKKIGRKM NNSKEKNRGM PSIVDIFKNY NATPPSKQET QEDSTVSSAS KRAKLSSSSH
601: NSQVNQEVEE SRETDWGYKT DEIDQSVFDE LPVEIQRELR SFLRTNKQFN TGKSKGDGST SSIAHYFPPL NR

Arabidopsis Description

POLHDNA polymerase eta [Source:UniProtKB/Swiss-Prot;Acc:Q8H2D5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.