Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d019198_P001 | Maize | cytosol | 27.38 | 73.6 |
| Zm00001d046782_P001 | Maize | cytosol | 27.38 | 73.6 |
| CDY39396 | Canola | nucleus | 73.51 | 73.29 |
| CDY60652 | Canola | nucleus | 72.92 | 72.81 |
| Zm00001d002308_P001 | Maize | cytosol | 26.79 | 72.29 |
| Bra025107.1-P | Field mustard | nucleus | 73.81 | 71.78 |
| PGSC0003DMT400002635 | Potato | cytosol | 34.38 | 70.86 |
| Zm00001d053264_P001 | Maize | cytosol | 36.01 | 69.34 |
| Zm00001d037012_P001 | Maize | cytosol | 19.94 | 62.04 |
| Os01t0757800-01 | Rice | cytosol | 52.83 | 55.3 |
| EES01500 | Sorghum | nucleus | 51.79 | 54.72 |
| GSMUA_Achr10P... | Banana | cytosol | 52.53 | 53.73 |
| TraesCS3A01G294700.3 | Wheat | nucleus | 49.55 | 53.11 |
| TraesCS3D01G294800.3 | Wheat | nucleus | 49.7 | 53.1 |
| Solyc01g034150.2.1 | Tomato | nucleus | 55.65 | 52.45 |
| KRH42423 | Soybean | nucleus | 54.61 | 52.2 |
| Zm00001d043404_P001 | Maize | nucleus | 52.08 | 51.78 |
| TraesCS3B01G329300.8 | Wheat | nucleus | 49.55 | 51.63 |
| HORVU3Hr1G072920.6 | Barley | cytosol, nucleus | 49.7 | 51.38 |
| VIT_01s0011g01180.t01 | Wine grape | nucleus | 57.59 | 50.06 |
| Zm00001d023711_P001 | Maize | nucleus | 14.58 | 42.98 |
| Zm00001d031070_P002 | Maize | cytosol, nucleus, peroxisome | 29.46 | 39.6 |
| PGSC0003DMT400002636 | Potato | extracellular | 21.43 | 36.0 |
| Zm00001d051953_P002 | Maize | nucleus | 26.64 | 31.85 |
| Zm00001d044720_P002 | Maize | nucleus | 25.0 | 31.58 |
| Zm00001d014511_P002 | Maize | nucleus | 26.79 | 31.41 |
| Zm00001d014510_P002 | Maize | nucleus, peroxisome, plastid | 26.04 | 30.86 |
| AT1G49980.1 | Thale cress | nucleus | 18.45 | 18.48 |
| AT5G44750.2 | Thale cress | plastid | 17.41 | 10.59 |
Protein Annotations
| KEGG:00230+2.7.7.7 | KEGG:00240+2.7.7.7 | Gene3D:1.10.150.20 | MapMan:14.2.1 | Gene3D:2.30.40.20 | Gene3D:3.30.1490.100 |
| Gene3D:3.30.70.270 | EntrezGene:834503 | ProteinID:AAC79146.1 | ProteinID:AED95154.1 | ProteinID:AED95155.1 | EMBL:AF360283 |
| EMBL:AJ416380 | ArrayExpress:AT5G44740 | EnsemblPlantsGene:AT5G44740 | RefSeq:AT5G44740 | TAIR:AT5G44740 | RefSeq:AT5G44740-TAIR-G |
| EnsemblPlants:AT5G44740.2 | TAIR:AT5G44740.2 | EMBL:AY113879 | EMBL:AY151396 | Unigene:At.19023 | ProteinID:BAB08827.1 |
| InterPro:DNA_pol_Y-fam_lit_finger_sf | InterPro:DNA_pol_Y-fam_little_finger | InterPro:DNA_pol_eta/kappa/iota/IV | EMBL:EF495196 | EMBL:EF495197 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003684 | GO:GO:0003824 | GO:GO:0003887 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006259 | GO:GO:0006260 | GO:GO:0006281 | GO:GO:0006950 | GO:GO:0006974 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009628 | GO:GO:0009650 | GO:GO:0009987 | GO:GO:0010224 |
| GO:GO:0016740 | GO:GO:0016779 | GO:GO:0042276 | GO:GO:0046872 | GO:GO:0071897 | InterPro:IPR001126 |
| InterPro:IPR036775 | RefSeq:NP_568638.2 | RefSeq:NP_851130.1 | PFAM:PF00817 | PFAM:PF11799 | PIRSF:PIRSF036603 |
| PO:PO:0000013 | PO:PO:0000014 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000293 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0004507 | PO:PO:0007611 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009031 | PO:PO:0009046 | PO:PO:0009049 | PO:PO:0020100 | PO:PO:0025022 | Symbol:POLH |
| PFscan:PS50173 | PANTHER:PTHR11076 | PANTHER:PTHR11076:SF11 | UniProt:Q8H2D5 | SUPFAM:SSF100879 | SUPFAM:SSF56672 |
| UniParc:UPI00000AD97C | InterPro:UmuC | SEG:seg | : | : | : |
Description
POLHDNA polymerase eta [Source:UniProtKB/Swiss-Prot;Acc:Q8H2D5]
Coordinates
chr5:-:18047733..18051896
Molecular Weight (calculated)
73989.2 Da
IEP (calculated)
6.526
GRAVY (calculated)
-0.570
Length
672 amino acids
Sequence
(BLAST)
(BLAST)
001: MPVARPEASD ARVIAHVDMD CFYVQVEQRK QPELRGLPSA VVQYNEWQGG GLIAVSYEAR KCGVKRSMRG DEAKAACPQI QLVQVPVARG KADLNLYRSA
101: GSEVVSILAK SGKCERASID EVYLDLTDAA ESMLADAPPE SLELIDEEVL KSHILGMNRE DGDDFKESVR NWICREDADR RDKLLSCGII IVAELRKQVL
201: KETEFTCSAG IAHNKMLAKL ASGMNKPAQQ TVVPYAAVQE LLSSLPIKKM KQLGGKLGTS LQTDLGVDTV GDLLQFSETK LQEHYGVNTG TWLWNIARGI
301: SGEEVQGRLL PKSHGSGKTF PGPRALKSLS TVQHWLNQLS EELSERLGSD LEQNKRIAST LTLHASAFRS KDSDSHKKFP SKSCPMRYGV TKIQEDAFNL
401: FQAALREYMG SFGIKPQGNK LETWRITGLS VSASKIVDIP SGTSSIMRYF QSQPTVPSRS ADGCVQGNVA MTASASEGCS EQRSTETQAA MPEVDTGVTY
501: TLPNFENQDK DIDLVSEKDV VSCPSNEATD VSTQSESNKG TQTKKIGRKM NNSKEKNRGM PSIVDIFKNY NATPPSKQET QEDSTVSSAS KRAKLSSSSH
601: NSQVNQEVEE SRETDWGYKT DEIDQSVFDE LPVEIQRELR SFLRTNKQFN TGKSKGDGST SSIAHYFPPL NR
101: GSEVVSILAK SGKCERASID EVYLDLTDAA ESMLADAPPE SLELIDEEVL KSHILGMNRE DGDDFKESVR NWICREDADR RDKLLSCGII IVAELRKQVL
201: KETEFTCSAG IAHNKMLAKL ASGMNKPAQQ TVVPYAAVQE LLSSLPIKKM KQLGGKLGTS LQTDLGVDTV GDLLQFSETK LQEHYGVNTG TWLWNIARGI
301: SGEEVQGRLL PKSHGSGKTF PGPRALKSLS TVQHWLNQLS EELSERLGSD LEQNKRIAST LTLHASAFRS KDSDSHKKFP SKSCPMRYGV TKIQEDAFNL
401: FQAALREYMG SFGIKPQGNK LETWRITGLS VSASKIVDIP SGTSSIMRYF QSQPTVPSRS ADGCVQGNVA MTASASEGCS EQRSTETQAA MPEVDTGVTY
501: TLPNFENQDK DIDLVSEKDV VSCPSNEATD VSTQSESNKG TQTKKIGRKM NNSKEKNRGM PSIVDIFKNY NATPPSKQET QEDSTVSSAS KRAKLSSSSH
601: NSQVNQEVEE SRETDWGYKT DEIDQSVFDE LPVEIQRELR SFLRTNKQFN TGKSKGDGST SSIAHYFPPL NR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.