Factsheet for PGSC0003DMT400002636

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
mitochondrion 1
extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g034150.2.1	Tomato	nucleus	53.5	30.01
KRH42423	Soybean	nucleus	41.5	23.61
EES01500	Sorghum	nucleus	36.75	23.11
TraesCS3A01G294700.3	Wheat	nucleus	35.75	22.81
Os01t0757800-01	Rice	cytosol	36.25	22.59
TraesCS3D01G294800.3	Wheat	nucleus	35.25	22.42
VIT_01s0011g01180.t01	Wine grape	nucleus	42.75	22.12
CDY39396	Canola	nucleus	37.0	21.96
CDY60652	Canola	nucleus	36.5	21.69
HORVU3Hr1G072920.6	Barley	cytosol, nucleus	35.25	21.69
Bra025107.1-P	Field mustard	nucleus	37.25	21.56
AT5G44740.2	Thale cress	nucleus	36.0	21.43
Zm00001d043404_P001	Maize	nucleus	35.25	20.86
TraesCS3B01G329300.8	Wheat	nucleus	33.5	20.78
GSMUA_Achr10P...	Banana	cytosol	32.5	19.79
Zm00001d053264_P001	Maize	cytosol	9.25	10.6
PGSC0003DMT400066206	Potato	cytosol, plastid	6.75	7.26
PGSC0003DMT400066146	Potato	nucleus	11.5	6.69
Zm00001d037012_P001	Maize	cytosol	2.25	4.17
Zm00001d031070_P002	Maize	cytosol, nucleus, peroxisome	4.0	3.2
Zm00001d051953_P002	Maize	nucleus	4.0	2.85
Zm00001d014511_P002	Maize	nucleus	4.0	2.79
PGSC0003DMT400002635	Potato	cytosol	2.25	2.76
Zm00001d019198_P001	Maize	cytosol	1.5	2.4
Zm00001d046782_P001	Maize	cytosol	1.5	2.4
Zm00001d002308_P001	Maize	cytosol	1.25	2.01
Zm00001d023711_P001	Maize	nucleus	1.0	1.75
Zm00001d014510_P002	Maize	nucleus, peroxisome, plastid	2.0	1.41
Zm00001d044720_P002	Maize	nucleus	1.75	1.32

Protein Annotations

KEGG:00230+2.7.7.7	KEGG:00240+2.7.7.7	Gene3D:3.30.1490.100	MapMan:35.1	InterPro:DNA_pol_Y-fam_lit_finger_sf	InterPro:DNA_pol_Y-fam_little_finger
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003684	GO:GO:0005488	GO:GO:0006139
GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
InterPro:IPR036775	UniProt:M0ZKE6	PFAM:PF11799	EnsemblPlantsGene:PGSC0003DMG402001013	PGSC:PGSC0003DMG402001013	EnsemblPlants:PGSC0003DMT400002636
PANTHER:PTHR11076	PANTHER:PTHR11076:SF11	SUPFAM:SSF100879	UniParc:UPI0002954E0B	SEG:seg	:

Description

DNA polymerase eta [Source:PGSC_GENE;Acc:PGSC0003DMG402001013]

Coordinates

chr1:-:13740619..13749604

Molecular Weight (calculated)

44815.8 Da

IEP (calculated)

6.528

GRAVY (calculated)

-0.676

Length

400 amino acids

Sequence
(BLAST)

001: MLLNSKVLAG ALGICPTTWL ASPELMTTTM VLTLASTSDR SSWLWNTARG INGEEVKERL LPNSHGSGKT FPGPRALKTV ASVEKWLNEL CEELSERLQS
101: DLEQNKRIAH TLTLHAHAYK SNDGDSFRKF PSKSCPLRYG TSKIKEDALS LFQAGLREYL GLFNVKISGN QNNGWGITGL SVSASKIVAI PSSIEPWIAC
201: REENEETKYS MPLDRQEEDK DMCKEKLPDK VTSICSSPDA EVYRGWEKDQ TESSGDYLTV KIRDSLESEE GKRKSNKEKG MSTISQYFQS QLSGSLLKAE
301: HASTSKLSES SSLSACQSEL PQENSPTRGE SSVDTHLYGQ IKLKRPAWSY DIDEIDQDIL NELPKQIQEE VQAWLRPQKR PNTVKRDLGI TRYFLPAKDK

Best Arabidopsis Sequence Match ( AT5G44740.3 )
(BLAST)

001: MRGDEAKAAC PQIQLVQVPV ARGKADLNLY RSAGSEVVSI LAKSGKCERA SIDEVYLDLT DAAESMLADA PPESLELIDE EVLKSHILGM NREDGDDFKE
101: SVRNWICRED ADRRDKLLSC GIIIVAELRK QVLKETEFTC SAGIAHNKML AKLASGMNKP AQQTVVPYAA VQELLSSLPI KKMKQLGGKL GTSLQTDLGV
201: DTVGDLLQFS ETKLQEHYGV NTGTWLWNIA RGISGEEVQG RLLPKSHGSG KTFPGPRALK SLSTVQHWLN QLSEELSERL GSDLEQNKRI ASTLTLHASA
301: FRSKDSDSHK KFPSKSCPMR YGVTKIQEDA FNLFQAALRE YMGSFGIKPQ GNKLETWRIT GLSVSASKIV DIPSGTSSIM RYFQSQPTVP SRSADGCVQG
401: NVAMTASASE GCSEQRSTET QAAMPEVDTG VTYTLPNFEN QDKDIDLVSE KDVVSCPSNE ATDVSTQSES NKGTQTKKIG RKMNNSKEKN RGMPSIVDIF
501: KNYNATPPSK QETQEDSTVS SASKRAKLSS SSHNSQVNQE VEESRETDWG YKTDEIDQSV FDELPVEIQR ELRSFLRTNK QFNTGKSKGD GSTSSIAHYF
601: PPLNR

Arabidopsis Description

POLHDNA polymerase eta [Source:UniProtKB/Swiss-Prot;Acc:Q8H2D5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.