Factsheet for Os01t0757800-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d046782_P001	Maize	cytosol	33.18	85.2
Zm00001d019198_P001	Maize	cytosol	33.18	85.2
Zm00001d002308_P001	Maize	cytosol	32.55	83.94
Zm00001d053264_P001	Maize	cytosol	43.3	79.66
TraesCS3A01G294700.3	Wheat	nucleus	73.83	75.6
EES01500	Sorghum	nucleus	72.9	73.58
TraesCS3D01G294800.3	Wheat	nucleus	71.96	73.45
HORVU3Hr1G072920.6	Barley	cytosol, nucleus	74.14	73.23
Zm00001d037012_P001	Maize	cytosol	23.99	71.3
TraesCS3B01G329300.8	Wheat	nucleus	71.5	71.16
PGSC0003DMT400002635	Potato	cytosol	34.11	67.18
Zm00001d043404_P001	Maize	nucleus	70.25	66.72
GSMUA_Achr10P...	Banana	cytosol	56.85	55.56
AT5G44740.2	Thale cress	nucleus	55.3	52.83
CDY39396	Canola	nucleus	53.74	51.19
Bra025107.1-P	Field mustard	nucleus	54.83	50.94
CDY60652	Canola	nucleus	53.27	50.82
Solyc01g034150.2.1	Tomato	nucleus	55.61	50.07
KRH42423	Soybean	nucleus	54.67	49.93
Zm00001d023711_P001	Maize	nucleus	16.98	47.81
VIT_01s0011g01180.t01	Wine grape	nucleus	57.32	47.61
Zm00001d031070_P002	Maize	cytosol, nucleus, peroxisome	35.36	45.4
Zm00001d044720_P002	Maize	nucleus	30.37	36.65
PGSC0003DMT400002636	Potato	extracellular	22.59	36.25
Zm00001d051953_P002	Maize	nucleus	31.62	36.12
Zm00001d014511_P002	Maize	nucleus	31.31	35.08
Zm00001d014510_P002	Maize	nucleus, peroxisome, plastid	30.84	34.92
Os03t0616300-01	Rice	nucleus	16.51	17.18
Os06t0691000-01	Rice	plastid	18.85	10.76

Protein Annotations

KEGG:00230+2.7.7.7	KEGG:00240+2.7.7.7	Gene3D:1.10.150.20	MapMan:14.2.1	Gene3D:2.30.40.20	Gene3D:3.30.1490.100
Gene3D:3.30.70.270	ProteinID:BAD87578.1	ProteinID:BAF06211.1	ProteinID:BAS74419.1	InterPro:DNA_pol_Y-fam_lit_finger_sf	InterPro:DNA_pol_Y-fam_little_finger
InterPro:DNA_pol_eta/kappa/iota/IV	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003684	GO:GO:0003824
GO:GO:0003887	GO:GO:0005488	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009650	GO:GO:0009987
GO:GO:0010224	GO:GO:0016740	GO:GO:0042276	InterPro:IPR001126	InterPro:IPR036775	EnsemblPlantsGene:Os01g0757800
EnsemblPlants:Os01t0757800-01	PFAM:PF00817	PFAM:PF11799	PIRSF:PIRSF036603	PFscan:PS50173	PANTHER:PTHR11076
PANTHER:PTHR11076:SF11	UniProt:Q5JLR9	SUPFAM:SSF100879	SUPFAM:SSF56672	UniParc:UPI00004C2A08	InterPro:UmuC
SEG:seg	:	:	:	:	:

Description

DNA polymerase etaDNA polymerase eta domain containing protein. (Os01t0757800-01);Hypothetical conserved gene. (Os01t0757800-02);Hypothetical conserved gene. (Os01t0757800-03)

Coordinates

chr1:+:31830303..31836694

Molecular Weight (calculated)

71002.7 Da

IEP (calculated)

7.906

GRAVY (calculated)

-0.439

Length

642 amino acids

Sequence
(BLAST)

001: MPVARPEPQE PRVIAHVDMD CFYVQVEQRR NPELRGQPTA VVQYNDWKGG GLIAVSYEAR KFGVKRSMRG DEAKMVCPSI NLVQVPVARD KADLNVYRSA
101: GSEVVTILST KGKCERASID EVYLDLTDAA KEMLLESPPE LLELIFEEAT KSNILGLPSD VSNREDSVRA WLCRADADYQ DKLLSCGAII VAQLRVKVLE
201: ETQFTCSAGI AHNKMLAKLV SGMHKPAQQT VVPSSAVQDF LVSLPIKKMK QLGGKLGSSL QDDLGVNTVG DLLSFTEDKL QEYYGVNTGT WLWKIARGIS
301: GEEVEDRLLP KSHGCGKTFP GPKALKNNAS VKTWLDRLCE ELSERIQSDL NQNKRIAQTL TLYARACKKN KSDSIKKFPS KSCPLRYGTV KIQEDAMKLF
401: ESGLHDFLGS QNTKWSITSL SVSASKIFDI PIGTSSILRY IKGPNSTVSP ANLDCSSLPE DPSLGNKLYI APNHEEHCEP SLSEKEDYGN NSNLAKQCQI
501: KEEKKVSKKL TEVKGTCSIL KFLSQSPVLS EKRKIDSLIC SHPGPESSSE PNKAEEHKAA QYVDRNKFNT AGSNSASSST WMFNVEDIDP AVVEELPPEI
601: QREIHGWIRP PKQSSSKTRG STISSYFQPA KSYSLQAIPI LL

Best Arabidopsis Sequence Match ( AT5G44740.2 )
(BLAST)

001: MPVARPEASD ARVIAHVDMD CFYVQVEQRK QPELRGLPSA VVQYNEWQGG GLIAVSYEAR KCGVKRSMRG DEAKAACPQI QLVQVPVARG KADLNLYRSA
101: GSEVVSILAK SGKCERASID EVYLDLTDAA ESMLADAPPE SLELIDEEVL KSHILGMNRE DGDDFKESVR NWICREDADR RDKLLSCGII IVAELRKQVL
201: KETEFTCSAG IAHNKMLAKL ASGMNKPAQQ TVVPYAAVQE LLSSLPIKKM KQLGGKLGTS LQTDLGVDTV GDLLQFSETK LQEHYGVNTG TWLWNIARGI
301: SGEEVQGRLL PKSHGSGKTF PGPRALKSLS TVQHWLNQLS EELSERLGSD LEQNKRIAST LTLHASAFRS KDSDSHKKFP SKSCPMRYGV TKIQEDAFNL
401: FQAALREYMG SFGIKPQGNK LETWRITGLS VSASKIVDIP SGTSSIMRYF QSQPTVPSRS ADGCVQGNVA MTASASEGCS EQRSTETQAA MPEVDTGVTY
501: TLPNFENQDK DIDLVSEKDV VSCPSNEATD VSTQSESNKG TQTKKIGRKM NNSKEKNRGM PSIVDIFKNY NATPPSKQET QEDSTVSSAS KRAKLSSSSH
601: NSQVNQEVEE SRETDWGYKT DEIDQSVFDE LPVEIQRELR SFLRTNKQFN TGKSKGDGST SSIAHYFPPL NR

Arabidopsis Description

POLHDNA polymerase eta [Source:UniProtKB/Swiss-Prot;Acc:Q8H2D5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.