Factsheet for TraesCS3B01G329300.8

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G294700.3	Wheat	nucleus	88.84	91.39
TraesCS3D01G294800.3	Wheat	nucleus	86.36	88.55
HORVU3Hr1G072920.6	Barley	cytosol, nucleus	86.2	85.54
Zm00001d019198_P001	Maize	cytosol	32.71	84.4
Zm00001d046782_P001	Maize	cytosol	32.71	84.4
Zm00001d002308_P001	Maize	cytosol	32.09	83.13
Zm00001d053264_P001	Maize	cytosol	43.26	79.94
EES01500	Sorghum	nucleus	72.25	73.27
Zm00001d037012_P001	Maize	cytosol	24.03	71.76
Os01t0757800-01	Rice	cytosol	71.16	71.5
PGSC0003DMT400002635	Potato	cytosol	32.87	65.03
Zm00001d043404_P001	Maize	nucleus	66.05	63.02
GSMUA_Achr10P...	Banana	cytosol	56.9	55.86
AT5G44740.2	Thale cress	nucleus	51.63	49.55
Zm00001d023711_P001	Maize	nucleus	17.36	49.12
CDY60652	Canola	nucleus	50.7	48.59
CDY39396	Canola	nucleus	50.7	48.52
KRH42423	Soybean	nucleus	52.71	48.36
Bra025107.1-P	Field mustard	nucleus	51.78	48.34
Solyc01g034150.2.1	Tomato	nucleus	53.18	48.11
Zm00001d031070_P002	Maize	cytosol, nucleus, peroxisome	35.5	45.8
VIT_01s0011g01180.t01	Wine grape	nucleus	53.8	44.89
Zm00001d044720_P002	Maize	nucleus	30.39	36.84
Zm00001d051953_P002	Maize	nucleus	31.78	36.48
Zm00001d014511_P002	Maize	nucleus	31.63	35.6
Zm00001d014510_P002	Maize	nucleus, peroxisome, plastid	30.85	35.1
PGSC0003DMT400002636	Potato	extracellular	20.78	33.5
TraesCS4B01G080200.1	Wheat	nucleus	16.28	16.03
TraesCS7B01G319400.1	Wheat	cytosol	8.06	11.23
TraesCS7B01G335900.1	Wheat	plastid	19.53	10.76

Protein Annotations

KEGG:00230+2.7.7.7	KEGG:00240+2.7.7.7	Gene3D:1.10.150.20	MapMan:14.2.1	Gene3D:2.30.40.20	Gene3D:3.30.1490.100
Gene3D:3.30.70.270	InterPro:DNA_pol_Y-fam_lit_finger_sf	InterPro:DNA_pol_Y-fam_little_finger	InterPro:DNA_pol_eta/kappa/iota/IV	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003684	GO:GO:0003824	GO:GO:0003887	GO:GO:0005488	GO:GO:0006139
GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009628	GO:GO:0009650	GO:GO:0009987	GO:GO:0010224	GO:GO:0016740	GO:GO:0042276
InterPro:IPR001126	InterPro:IPR036775	PFAM:PF00817	PFAM:PF11799	PIRSF:PIRSF036603	PFscan:PS50173
PANTHER:PTHR11076	PANTHER:PTHR11076:SF11	SUPFAM:SSF100879	SUPFAM:SSF56672	EnsemblPlantsGene:TraesCS3B01G329300	EnsemblPlants:TraesCS3B01G329300.8
InterPro:UmuC	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3B:+:532183222..532190739

Molecular Weight (calculated)

70375.3 Da

IEP (calculated)

7.329

GRAVY (calculated)

-0.471

Length

645 amino acids

Sequence
(BLAST)

001: MPVARPEPQE PRVIAHLDLD CFYVQVEQRR NPALKGQPTA VVQYNDWKGG GLIAVSYEAR KFGVKRSMRG DEAKNVCPGI NLVQVPVSRD KADLNVYRNA
101: GSEVVAILST KGKCERASMD EVYLDLTDAA KEMLLESPPE SSESIFDEAT KSNILDLPSD VGEREENVKA WLCRADANYQ DKLLACGAIL VAQLRVKVLE
201: ETQFTCSAGI AHNKMLAKLV SGMHKPAQQT VVPSSSVQDF LASLPVKKMK QLGGKLGSSL QGDLGVETVG DLLGFTEEKL QEYYGVNTGT WLWKTARGIS
301: GEEVEDRLLP KSHGCGKTFP GPKALKNHSS VKSWLDKLCE ELSERIQSDL SCNKRVAQTL TLHARASKEN ESNSVKKFPS KSCPLRYGTG KIQEDAMKLF
401: ESGLHDFWGS RNAGWSITSL SVTASKIFDI PSGTNSILKY IKGPSSDASS AILDSSSTPE LTPLVVHEQC EPSSINEECG NSISAKQCRS IEGKGVPKKL
501: SKVQGTGSIL KFLSQSQPAQ HEKRNFDGLI CSHQGPESSS GASEAEQHGR DNINTAVVHS SGSGNTWMLN VEDIDPAVVG ELPLEIQREI QGWIHPSKQA
601: TPKKRGSTIS SYFSPAGRHD DGFTPSLSAA SRYLETKRYK ILHDQ

Best Arabidopsis Sequence Match ( AT5G44740.1 )
(BLAST)

001: MRLKLLVLRF NWFKFLWLVV VSILAKSGKC ERASIDEVYL DLTDAAESML ADAPPESLEL IDEEVLKSHI LGMNREDGDD FKESVRNWIC REDADRRDKL
101: LSCGIIIVAE LRKQVLKETE FTCSAGIAHN KMLAKLASGM NKPAQQTVVP YAAVQELLSS LPIKKMKQLG GKLGTSLQTD LGVDTVGDLL QFSETKLQEH
201: YGVNTGTWLW NIARGISGEE VQGRLLPKSH GSGKTFPGPR ALKSLSTVQH WLNQLSEELS ERLGSDLEQN KRIASTLTLH ASAFRSKDSD SHKKFPSKSC
301: PMRYGVTKIQ EDAFNLFQAA LREYMGSFGI KPQGNKLETW RITGLSVSAS KIVDIPSGTS SIMRYFQSQP TVPSRSADGC VQGNVAMTAS ASEGCSEQRS
401: TETQAAMPEV DTGVTYTLPN FENQDKDIDL VSEKDVVSCP SNEATDVSTQ SESNKGTQTK KIGRKMNNSK EKNRGMPSIV DIFKNYNATP PSKQETQEDS
501: TVSSASKRAK LSSSSHNSQV NQEVEESRET DWGYKTDEID QSVFDELPVE IQRELRSFLR TNKQFNTGKS KGDGSTSSIA HYFPPLNR

Arabidopsis Description

POLHDNA polymerase eta [Source:UniProtKB/Swiss-Prot;Acc:Q8H2D5]
SUBAcon: [golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.