Factsheet for TraesCS3D01G294800.3

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G294700.3	Wheat	nucleus	90.46	90.75
TraesCS3B01G329300.8	Wheat	nucleus	88.55	86.36
HORVU3Hr1G072920.6	Barley	cytosol, nucleus	88.08	85.23
Zm00001d019198_P001	Maize	cytosol	33.23	83.6
Zm00001d046782_P001	Maize	cytosol	33.23	83.6
Zm00001d002308_P001	Maize	cytosol	32.59	82.33
Zm00001d053264_P001	Maize	cytosol	44.04	79.37
EES01500	Sorghum	nucleus	73.45	72.64
Os01t0757800-01	Rice	cytosol	73.45	71.96
Zm00001d037012_P001	Maize	cytosol	24.32	70.83
PGSC0003DMT400002635	Potato	cytosol	34.18	65.95
Zm00001d043404_P001	Maize	nucleus	68.2	63.46
GSMUA_Achr10P...	Banana	cytosol	57.39	54.95
AT5G44740.2	Thale cress	nucleus	53.1	49.7
Solyc01g034150.2.1	Tomato	nucleus	55.48	48.95
Zm00001d023711_P001	Maize	nucleus	17.65	48.68
CDY39396	Canola	nucleus	52.15	48.66
CDY60652	Canola	nucleus	51.99	48.59
KRH42423	Soybean	nucleus	53.9	48.22
Bra025107.1-P	Field mustard	nucleus	52.94	48.19
VIT_01s0011g01180.t01	Wine grape	nucleus	56.92	46.31
Zm00001d031070_P002	Maize	cytosol, nucleus, peroxisome	36.25	45.6
Zm00001d044720_P002	Maize	nucleus	31.0	36.65
Zm00001d051953_P002	Maize	nucleus	32.27	36.12
Zm00001d014511_P002	Maize	nucleus	32.11	35.25
PGSC0003DMT400002636	Potato	extracellular	22.42	35.25
Zm00001d014510_P002	Maize	nucleus, peroxisome, plastid	31.32	34.74
TraesCS7D01G426800.1	Wheat	plastid	19.08	10.21

Protein Annotations

KEGG:00230+2.7.7.7	KEGG:00240+2.7.7.7	Gene3D:1.10.150.20	MapMan:14.2.1	Gene3D:2.30.40.20	Gene3D:3.30.1490.100
Gene3D:3.30.70.270	ncoils:Coil	InterPro:DNA_pol_Y-fam_lit_finger_sf	InterPro:DNA_pol_Y-fam_little_finger	InterPro:DNA_pol_eta/kappa/iota/IV	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003684	GO:GO:0003824	GO:GO:0003887	GO:GO:0005488
GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009628	GO:GO:0009650	GO:GO:0009987	GO:GO:0010224	GO:GO:0016740
GO:GO:0042276	InterPro:IPR001126	InterPro:IPR036775	PFAM:PF00817	PFAM:PF11799	PIRSF:PIRSF036603
PFscan:PS50173	PANTHER:PTHR11076	PANTHER:PTHR11076:SF11	SUPFAM:SSF100879	SUPFAM:SSF56672	EnsemblPlantsGene:TraesCS3D01G294800
EnsemblPlants:TraesCS3D01G294800.3	InterPro:UmuC	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3D:+:406156544..406164419

Molecular Weight (calculated)

68941.6 Da

IEP (calculated)

7.248

GRAVY (calculated)

-0.473

Length

629 amino acids

Sequence
(BLAST)

001: MPVARPEPQE PRVIAHLDLD CFYVQVEQRR NPALRGQPTA VVQYNDWKGG GLIAVSYEAR KFGVKRSMRG DEAKNVCPGI NLVQVPVSRD KADLNVYRNA
101: GSEVVAILST KGKCERASID EVYLDLTDAA KEMLLESPPE SSEFTFEEAT KSNILDLPSD VGDREENVKA WLCRADANYQ DKLLACGAVL VAQLRVKVLE
201: ETQFTCSAGI AHNKMLAKLV SGMHKPAQQT VVPSSSVQDF LASLPVKKMK QLGGKLGSSL QDDLGVKTVG DLLGFTEEKL QEYYGVNTGT WLWKTARGFS
301: GEEVEDRLLP KSHGCGKTFP GPKALKNHSS VKSWLDKLCE ELSERIQSDL SCNKRVAQTL TLHARASKEN ECNSMKKFPS KSCPLRYGTG KIQEDAMKLF
401: ESGLHDFWGS RSARWSITSL SVTASKIFDI PSGTNSILKY IKGPSSNAST AILDSSSTPE LTPFVGNVTQ LNIADFHEEQ CEPSSIKEEC DNSISATQCR
501: LIEGKGAPKK LSKVQGTGSI LKFLSQSQPA QHEKRNFDGL ICSHQGPESS SGASVAEQHG RDNINTAVDH SSGSGDTWML NVEDIDPDVV GELPLEIQRE
601: IQGWIRPSKQ ATPKKRGSTI SSYFSPARR

Best Arabidopsis Sequence Match ( AT5G44740.2 )
(BLAST)

001: MPVARPEASD ARVIAHVDMD CFYVQVEQRK QPELRGLPSA VVQYNEWQGG GLIAVSYEAR KCGVKRSMRG DEAKAACPQI QLVQVPVARG KADLNLYRSA
101: GSEVVSILAK SGKCERASID EVYLDLTDAA ESMLADAPPE SLELIDEEVL KSHILGMNRE DGDDFKESVR NWICREDADR RDKLLSCGII IVAELRKQVL
201: KETEFTCSAG IAHNKMLAKL ASGMNKPAQQ TVVPYAAVQE LLSSLPIKKM KQLGGKLGTS LQTDLGVDTV GDLLQFSETK LQEHYGVNTG TWLWNIARGI
301: SGEEVQGRLL PKSHGSGKTF PGPRALKSLS TVQHWLNQLS EELSERLGSD LEQNKRIAST LTLHASAFRS KDSDSHKKFP SKSCPMRYGV TKIQEDAFNL
401: FQAALREYMG SFGIKPQGNK LETWRITGLS VSASKIVDIP SGTSSIMRYF QSQPTVPSRS ADGCVQGNVA MTASASEGCS EQRSTETQAA MPEVDTGVTY
501: TLPNFENQDK DIDLVSEKDV VSCPSNEATD VSTQSESNKG TQTKKIGRKM NNSKEKNRGM PSIVDIFKNY NATPPSKQET QEDSTVSSAS KRAKLSSSSH
601: NSQVNQEVEE SRETDWGYKT DEIDQSVFDE LPVEIQRELR SFLRTNKQFN TGKSKGDGST SSIAHYFPPL NR

Arabidopsis Description

POLHDNA polymerase eta [Source:UniProtKB/Swiss-Prot;Acc:Q8H2D5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.