Factsheet for HORVU3Hr1G072920.6

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G294700.3	Wheat	nucleus	90.0	93.3
TraesCS3D01G294800.3	Wheat	nucleus	85.23	88.08
TraesCS3B01G329300.8	Wheat	nucleus	85.54	86.2
Zm00001d046782_P001	Maize	cytosol	32.77	85.2
Zm00001d019198_P001	Maize	cytosol	32.77	85.2
Zm00001d002308_P001	Maize	cytosol	32.15	83.94
Zm00001d053264_P001	Maize	cytosol	43.08	80.23
EES01500	Sorghum	nucleus	73.69	75.31
Os01t0757800-01	Rice	cytosol	73.23	74.14
Zm00001d037012_P001	Maize	cytosol	24.0	72.22
PGSC0003DMT400002635	Potato	cytosol	33.08	65.95
Zm00001d043404_P001	Maize	nucleus	68.15	65.53
GSMUA_Achr10P...	Banana	cytosol	56.31	55.71
AT5G44740.2	Thale cress	nucleus	51.38	49.7
CDY39396	Canola	nucleus	51.08	49.26
Zm00001d023711_P001	Maize	nucleus	17.23	49.12
Bra025107.1-P	Field mustard	nucleus	51.85	48.77
Solyc01g034150.2.1	Tomato	nucleus	53.38	48.67
CDY60652	Canola	nucleus	50.31	48.59
KRH42423	Soybean	nucleus	52.15	48.22
Zm00001d031070_P002	Maize	cytosol, nucleus, peroxisome	35.69	46.4
VIT_01s0011g01180.t01	Wine grape	nucleus	54.31	45.67
Zm00001d044720_P002	Maize	nucleus	30.46	37.22
Zm00001d051953_P002	Maize	nucleus	31.85	36.83
Zm00001d014511_P002	Maize	nucleus	31.69	35.95
Zm00001d014510_P002	Maize	nucleus, peroxisome, plastid	31.08	35.63
PGSC0003DMT400002636	Potato	extracellular	21.69	35.25
HORVU4Hr1G013680.2	Barley	nucleus	15.85	15.73
HORVU7Hr1G099700.8	Barley	cytosol, mitochondrion, nucleus, plastid	18.46	10.23

Protein Annotations

KEGG:00230+2.7.7.7	KEGG:00240+2.7.7.7	Gene3D:1.10.150.20	MapMan:14.2.1	Gene3D:2.30.40.20	Gene3D:3.30.1490.100
Gene3D:3.30.70.270	UniProt:A0A287LM98	InterPro:DNA_pol_Y-fam_lit_finger_sf	InterPro:DNA_pol_Y-fam_little_finger	InterPro:DNA_pol_eta/kappa/iota/IV	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003684	GO:GO:0003824	GO:GO:0003887	GO:GO:0005488
GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009628	GO:GO:0009650	GO:GO:0009987	GO:GO:0010224	GO:GO:0016740
GO:GO:0042276	EnsemblPlantsGene:HORVU3Hr1G072920	EnsemblPlants:HORVU3Hr1G072920.6	InterPro:IPR001126	InterPro:IPR036775	PFAM:PF00817
PFAM:PF11799	PIRSF:PIRSF036603	PFscan:PS50173	PANTHER:PTHR11076	PANTHER:PTHR11076:SF11	SUPFAM:SSF100879
SUPFAM:SSF56672	UniParc:UPI000B463503	InterPro:UmuC	SEG:seg	:	:

Description

No Description!

Coordinates

chrchr3H:-:550211695..550216887

Molecular Weight (calculated)

71424.5 Da

IEP (calculated)

7.379

GRAVY (calculated)

-0.552

Length

650 amino acids

Sequence
(BLAST)

001: GGGGEREAMP VARPEPQEPR VIAHLDLDCF YVQVEQRRNP ALRGQPTAVV QYNDWKGGGL IAVSYEARKF GVKRSMRGDE AKNVCPGINL VQVPVSRDKA
101: DLNVYRNAGS EVVAILSTKG KCERASIDEV YLDLTDAAKE MLLESPPESS ESIFEEATKS NILDLPSDAG DREENVKAWL CRADADYQDK LLACGTILVA
201: QLRVKVLEET QFTCSAGIAH NKMLAKLVSG MHKPAQQTVV PSSSVQDFLA SLPVKKMKQL GGKLGSSLQD DLGVETVGDL LGFTEEKLQE YYGVNTGTWL
301: WKTARGISGE EVEDRLLPKS HGCGKTFPGP KALKNNSSVK SWLDKLCEEL SERIQSDLSC NKRVAQTLTL QARASKENEG NSMKKFPSKS CPLRYGTGKI
401: QEDAMKLFES GLHDFWGSRN AGWSITSLSV TASKIFDIPS GTNSILKYIK GRSSNASSAI TDSSSTPELT PFVDNKLYMT PVYEERCEPS SIKEDCDDSN
501: SAKQCSSIER KDVPKKLSKI QGTGSILKFL SQSQPAQHEK RNFDGLICSH QGPESSSGAS EAEQYGRDNT NTTIDQSSGN TWMLNVEDID LAVVGELPLE
601: IQREIQGWIR PPKQATPKKR GSTISSYFSP AGRFMQSHPV NTLHRPLRKK

Best Arabidopsis Sequence Match ( AT5G44740.2 )
(BLAST)

001: MPVARPEASD ARVIAHVDMD CFYVQVEQRK QPELRGLPSA VVQYNEWQGG GLIAVSYEAR KCGVKRSMRG DEAKAACPQI QLVQVPVARG KADLNLYRSA
101: GSEVVSILAK SGKCERASID EVYLDLTDAA ESMLADAPPE SLELIDEEVL KSHILGMNRE DGDDFKESVR NWICREDADR RDKLLSCGII IVAELRKQVL
201: KETEFTCSAG IAHNKMLAKL ASGMNKPAQQ TVVPYAAVQE LLSSLPIKKM KQLGGKLGTS LQTDLGVDTV GDLLQFSETK LQEHYGVNTG TWLWNIARGI
301: SGEEVQGRLL PKSHGSGKTF PGPRALKSLS TVQHWLNQLS EELSERLGSD LEQNKRIAST LTLHASAFRS KDSDSHKKFP SKSCPMRYGV TKIQEDAFNL
401: FQAALREYMG SFGIKPQGNK LETWRITGLS VSASKIVDIP SGTSSIMRYF QSQPTVPSRS ADGCVQGNVA MTASASEGCS EQRSTETQAA MPEVDTGVTY
501: TLPNFENQDK DIDLVSEKDV VSCPSNEATD VSTQSESNKG TQTKKIGRKM NNSKEKNRGM PSIVDIFKNY NATPPSKQET QEDSTVSSAS KRAKLSSSSH
601: NSQVNQEVEE SRETDWGYKT DEIDQSVFDE LPVEIQRELR SFLRTNKQFN TGKSKGDGST SSIAHYFPPL NR

Arabidopsis Description

POLHDNA polymerase eta [Source:UniProtKB/Swiss-Prot;Acc:Q8H2D5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.