Factsheet for HORVU4Hr1G013680.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G234800.1	Wheat	nucleus	92.98	93.12
TraesCS4B01G080200.1	Wheat	nucleus	91.3	91.3
KXG38024	Sorghum	nucleus	72.52	75.16
Os03t0616300-01	Rice	nucleus	68.4	72.61
Zm00001d013729_P003	Maize	nucleus	71.3	68.88
GSMUA_Achr5P01740_001	Banana	nucleus	56.49	57.28
PGSC0003DMT400066146	Potato	nucleus	57.1	54.36
Solyc01g107010.2.1	Tomato	nucleus	57.1	54.36
CDY50970	Canola	nucleus	53.44	53.52
CDY28119	Canola	nucleus	53.13	52.73
KRH27580	Soybean	nucleus	54.5	52.65
AT1G49980.1	Thale cress	nucleus	53.13	51.86
Bra018821.1-P	Field mustard	nucleus	53.44	51.47
VIT_03s0091g00860.t01	Wine grape	nucleus	54.96	51.14
KRH77930	Soybean	cytosol	47.48	49.52
HORVU3Hr1G072920.6	Barley	cytosol, nucleus	15.73	15.85
HORVU7Hr1G099700.8	Barley	cytosol, mitochondrion, nucleus, plastid	18.63	10.4

Protein Annotations

KEGG:00230+2.7.7.7	KEGG:00240+2.7.7.7	Gene3D:1.10.150.810	MapMan:14.2.3	Gene3D:2.30.40.20	Gene3D:3.30.1490.100
Gene3D:3.30.70.270	EMBL:AK371137	InterPro:DNA_pol_Y-fam_lit_finger_sf	InterPro:DNA_pol_Y-fam_little_finger	InterPro:DNA_pol_eta/kappa/iota/IV	InterPro:DNApol_IV
UniProt:F2E4R3	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003684	GO:GO:0003697
GO:GO:0003824	GO:GO:0003887	GO:GO:0005488	GO:GO:0005575	GO:GO:0006139	GO:GO:0006259
GO:GO:0006281	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016020	GO:GO:0016740	GO:GO:0071897	EnsemblPlantsGene:HORVU4Hr1G013680	EnsemblPlants:HORVU4Hr1G013680.2	InterPro:IPR001126
InterPro:IPR036775	HAMAP:MF_01113	PFAM:PF00817	PFAM:PF11799	PIRSF:PIRSF036603	PFscan:PS50173
PANTHER:PTHR11076	PANTHER:PTHR11076:SF33	SUPFAM:SSF100879	SUPFAM:SSF56672	UniParc:UPI0002007C46	InterPro:UmuC
SEG:seg	:	:	:	:	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2E4R3]

Coordinates

chrchr4H:-:48447636..48453223

Molecular Weight (calculated)

72608.8 Da

IEP (calculated)

6.186

GRAVY (calculated)

-0.496

Length

655 amino acids

Sequence
(BLAST)

001: MSSAAGTPSD GGGDRPWQSY HTAYTNAKAG MEGVDREKVQ KVIYEMSKGS KYFENEQKKE AITKLKIEHL RAQCAKLTDN DISHFQKIAE RKILELEASR
101: DLSKIWLHTD MDAFYAAVET LENPSLKEKP LAVGGMSMIA TASYEARKFG VRAAMPGFIG CKLCPNLVFV RPNFERYTHY SGLARKVFQR YDPNFLATSL
201: DEAYLDITEV CSERGITGEE VASELRDAVH QETGLTCSAG VAPNRMIAKV CSDINKPNGQ FILPNDRDAV TTFVSTLPIR KIGGIGKVTE QMLHQVLGIT
301: TCQEMLQKAA FLCALFSEGS TDFFLSVGLG LGGTETPEHR LRKSMSCERT FSATNDSRLL FEKLDNLAEN LADDMQKECL KGRTLTLKLK TAAFEVRTRA
401: ATAQNYISSK EDILIYAKKL LKAEMPLSLR LMGLRMSHFS GEKDDSTSPT QKTLDRFFHS SDINSNTNGT NGASCIDVSG GDNDCNDATM KDECSIHDAE
501: KDVPVDQRPS HEENSSVPEG ASSVNYDNEV ASSSWKVTRI EKFDELGDLT SSKASASSSK HGQHFWVDGY ICSMCGFELP PCFEEERQEH SDFHLAEMLQ
601: QEEAVDGTAR LSKERLAERP CSSATTPTPK KKLKSSKEGK HIPIDSFFLK CNKNL

Best Arabidopsis Sequence Match ( AT1G49980.1 )
(BLAST)

001: MDNGESSSTN NSSRPWESYN TVFTNAKAGM EGVDKEKVQR VVYEMSKGSK YFQNEERKEA LMKQKIEHMR DRCAKLSSLD LSNYQKVVDK RILELEATRD
101: LSRIWLHVDM DAFYAAVETL SDPSIKGKPM AVGGLSMIST ANYEARKFGV RAAMPGFIAR KLCPDLIFVP VDFTKYTHYS DLTRKVFRNY DPHFIAGSLD
201: EAYLDITEVC RERGLSGGEI AEELRSSVYS ETGLTCSAGV AANRLLAKVC SDINKPNGQF VLQNDRSTVM TFVSFLPVRK IGGIGKVTEH ILKDALGIKT
301: CEEMVQKGSL LYALFSQSSA DFFLSVGLGL GGTNTPQVRS RKSISSERTF AATGDERLLY SKLDELAEML SHDMKKEGLT ARTLTLKLKT ASFEIRSRAV
401: SLQRYTCSSD DILKHATKLL KAELPVSVRL IGLRMSQFVE EIRNSDPSQG TITKFIVQKD SSRQAQDLDD NDSFDLDANK NCLSNDESGN VSFGSHETSS
501: AHLKDVVEYE ERSQIDSGKV IPNQECMKKE ERLQILEGDS LLKKYKECKP DTSHSMNDNS NATEAVSVFP QTEPLYWIDG YKCVLCGIEL PPSFVEERQE
601: HSDFHLAQRL QNEETGSSSS TTPSKRRILG KEKVNSKPKK QKPDQKDSSK HIPIHAFFTK SNQNSNETQR K

Arabidopsis Description

POLKDNA polymerase kappa [Source:UniProtKB/Swiss-Prot;Acc:Q6JDV7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.