CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH27580	Soybean	nucleus	83.28	77.14
VIT_03s0091g00860.t01	Wine grape	nucleus	60.35	53.84
CDY50970	Canola	nucleus	55.1	52.91
CDY28119	Canola	nucleus	55.57	52.88
AT1G49980.1	Thale cress	nucleus	55.25	51.71
PGSC0003DMT400066146	Potato	nucleus	56.53	51.6
Solyc01g107010.2.1	Tomato	nucleus	56.21	51.31
Bra018821.1-P	Field mustard	nucleus	54.94	50.74
KXG38024	Sorghum	nucleus	49.84	49.53
GSMUA_Achr5P01740_001	Banana	nucleus	50.0	48.61
TraesCS4A01G234800.1	Wheat	nucleus	50.0	48.01
Zm00001d013729_P003	Maize	nucleus	51.59	47.79
HORVU4Hr1G013680.2	Barley	nucleus	49.52	47.48
TraesCS4B01G080200.1	Wheat	nucleus	49.04	47.02
Os03t0616300-01	Rice	nucleus	44.27	45.06
KRH42423	Soybean	nucleus	17.83	15.93
KRH77949	Soybean	plastid	19.11	10.76

Protein Annotations

KEGG:00230+2.7.7.7	KEGG:00240+2.7.7.7	Gene3D:1.10.150.810	MapMan:14.2.3	Gene3D:2.30.40.20	Gene3D:3.30.1490.100
Gene3D:3.30.70.270	UniProt:A0A0R0LFA9	EMBL:ACUP02000686	InterPro:DNA_pol_Y-fam_lit_finger_sf	InterPro:DNA_pol_Y-fam_little_finger	InterPro:DNA_pol_eta/kappa/iota/IV
InterPro:DNApol_IV	EnsemblPlantsGene:GLYMA_01G242400	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003684
GO:GO:0003824	GO:GO:0003887	GO:GO:0005488	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740
GO:GO:0071897	InterPro:IPR001126	InterPro:IPR036775	EnsemblPlants:KRH77930	ProteinID:KRH77930	ProteinID:KRH77930.1
PFAM:PF00817	PFAM:PF11799	PIRSF:PIRSF036603	PFscan:PS50173	PANTHER:PTHR11076	PANTHER:PTHR11076:SF33
SUPFAM:SSF100879	SUPFAM:SSF56672	UniParc:UPI0006EDE131	InterPro:UmuC	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:+:56590666..56594839

Molecular Weight (calculated)

71150.7 Da

IEP (calculated)

6.957

GRAVY (calculated)

-0.402

Length

628 amino acids

Sequence
(BLAST)

001: MEGVDKEKVQ RVVYEMSKGS KYFQNEERKE AFIKQKIDNM RIQCASLSQA DLAHYQKVAD SRIVELESSR DLSRIWLHVD MDAFYAAVET LSNPTLKGKP
101: MAVGSMSMIS TANYEARKFG FRAAMPGFIA RKLCPELIFV PTDFNKYNYY SDLTRKVFRR YDPNFIAGSL DEAYLDITEV CRERNVKSEE IVQELRAGVN
201: EETGLTCSAG VAPNRLLAKV LGFSDINKPN GEYVLPNDRM AVMTFVSSLP IRKIGGIGKV TENILKRVFG INTCEQMLGK SSYLCALFSQ STAGIKRAAE
301: NIIPKFTFIL SFFILFLLLD TYHHLFSQVR FRKSISNERT FSATKDEVLL HKKMEELAEM LSADMQKEGL CGRTLTLKLK TASFEVRTGA VTLQKYISSS
401: EDILKHAKKL LQTELPISSD PTQKTITNFI TSGDVNRNCS SFPDVADHDF VSNSETDLSI DSWQTSQLDW RDPFDGNHLS DVDYQSCIVQ KSDCVEEVQT
501: SSNDATSSHY NGFTEVLGST SYQGKFEGIN VKNGSNLLED ERLDSCCQEK TMLWLNDYKC SLCGIELPPS FVAERLEHSD FHLAEKLQKE ESRIHQTSVP
601: SQRRMESLDK ANPRSKSCRR KKAVIHTY

Best Arabidopsis Sequence Match ( AT1G49980.1 )
(BLAST)

001: MDNGESSSTN NSSRPWESYN TVFTNAKAGM EGVDKEKVQR VVYEMSKGSK YFQNEERKEA LMKQKIEHMR DRCAKLSSLD LSNYQKVVDK RILELEATRD
101: LSRIWLHVDM DAFYAAVETL SDPSIKGKPM AVGGLSMIST ANYEARKFGV RAAMPGFIAR KLCPDLIFVP VDFTKYTHYS DLTRKVFRNY DPHFIAGSLD
201: EAYLDITEVC RERGLSGGEI AEELRSSVYS ETGLTCSAGV AANRLLAKVC SDINKPNGQF VLQNDRSTVM TFVSFLPVRK IGGIGKVTEH ILKDALGIKT
301: CEEMVQKGSL LYALFSQSSA DFFLSVGLGL GGTNTPQVRS RKSISSERTF AATGDERLLY SKLDELAEML SHDMKKEGLT ARTLTLKLKT ASFEIRSRAV
401: SLQRYTCSSD DILKHATKLL KAELPVSVRL IGLRMSQFVE EIRNSDPSQG TITKFIVQKD SSRQAQDLDD NDSFDLDANK NCLSNDESGN VSFGSHETSS
501: AHLKDVVEYE ERSQIDSGKV IPNQECMKKE ERLQILEGDS LLKKYKECKP DTSHSMNDNS NATEAVSVFP QTEPLYWIDG YKCVLCGIEL PPSFVEERQE
601: HSDFHLAQRL QNEETGSSSS TTPSKRRILG KEKVNSKPKK QKPDQKDSSK HIPIHAFFTK SNQNSNETQR K

Arabidopsis Description

POLKDNA polymerase kappa [Source:UniProtKB/Swiss-Prot;Acc:Q6JDV7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.