Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plasma membrane 1
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400066146 | Potato | nucleus | 89.83 | 89.83 |
| VIT_03s0091g00860.t01 | Wine grape | nucleus | 62.79 | 61.36 |
| CDY50970 | Canola | nucleus | 57.41 | 60.4 |
| CDY28119 | Canola | nucleus | 57.56 | 60.0 |
| AT1G49980.1 | Thale cress | nucleus | 58.14 | 59.61 |
| KRH27580 | Soybean | nucleus | 58.28 | 59.14 |
| Bra018821.1-P | Field mustard | nucleus | 57.12 | 57.79 |
| KXG38024 | Sorghum | nucleus | 52.76 | 57.44 |
| GSMUA_Achr5P01740_001 | Banana | nucleus | 53.92 | 57.43 |
| HORVU4Hr1G013680.2 | Barley | nucleus | 54.36 | 57.1 |
| TraesCS4A01G234800.1 | Wheat | nucleus | 54.07 | 56.88 |
| KRH77930 | Soybean | cytosol | 51.31 | 56.21 |
| TraesCS4B01G080200.1 | Wheat | nucleus | 53.05 | 55.73 |
| Zm00001d013729_P003 | Maize | nucleus | 54.8 | 55.6 |
| Os03t0616300-01 | Rice | nucleus | 48.4 | 53.97 |
| Solyc01g034150.2.1 | Tomato | nucleus | 16.57 | 15.99 |
| Solyc01g107510.2.1 | Tomato | nucleus | 18.6 | 12.25 |
Protein Annotations
| KEGG:00230+2.7.7.7 | KEGG:00240+2.7.7.7 | Gene3D:1.10.150.810 | MapMan:14.2.3 | Gene3D:2.30.40.20 | Gene3D:3.30.1490.100 |
| Gene3D:3.30.70.270 | InterPro:DNA_pol_Y-fam_lit_finger_sf | InterPro:DNA_pol_Y-fam_little_finger | InterPro:DNA_pol_eta/kappa/iota/IV | InterPro:DNApol_IV | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003684 | GO:GO:0003697 | GO:GO:0003824 | GO:GO:0003887 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006281 | GO:GO:0006950 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016740 |
| GO:GO:0071897 | InterPro:IPR001126 | InterPro:IPR036775 | UniProt:K4B2R8 | HAMAP:MF_01113 | PFAM:PF00817 |
| PFAM:PF11799 | PIRSF:PIRSF036603 | PFscan:PS50173 | PANTHER:PTHR11076 | PANTHER:PTHR11076:SF33 | SUPFAM:SSF100879 |
| SUPFAM:SSF56672 | EnsemblPlantsGene:Solyc01g107010.2 | EnsemblPlants:Solyc01g107010.2.1 | UniParc:UPI0002767AA3 | InterPro:UmuC | SEG:seg |
Description
No Description!
Coordinates
chr1:+:94695983..94701575
Molecular Weight (calculated)
76608.5 Da
IEP (calculated)
6.609
GRAVY (calculated)
-0.463
Length
688 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKSEASVGS EDPSSSRPWE SYHTVFTNAK AGMEGVDKEK VQRIVYEMSK GSKYFENEEK KEAYTKQKIE NMRIQYSKLT AQDISHHQKI ADKRILELEA
101: TRDLSRIWLH VDMDAFYAAV ETLCNPSLKG RPMAVGSMSM LSTANYEARK FGVRAAMPGF IARKLCPELL FVPVDFQKYN HYSNLTRKVF QKYDPNFLAA
201: SLDEAYLDIT SVCKESGITS GEVAKELRES VHLETGLTCS AGVAPNRLLA KVCSDINKPN GQFVLPNDRS AVVTFISSLP IRKIGGIGKV TERILKDVFG
301: IATCEEMLQK SSSLCGLFSR SSADFFLSVG LGLGGTDTPQ YRMRKSISNE RTFSATSDEA LLFQKLVDLS EMLSADMIKE GLFGRTLTLK LKTASFEIRS
401: RAVTLPSYIS SSEEILKHAS KLLKAEFPVS LRLMGLRMSH FSEDKNGIPP DPTQKTLSSF IFSGDASGGK TSDYRPLVSN VCDNTFSVDE NCCPTYCPET
501: SCDLRVSSME NQASDSTYSC HAIGNINEEL NETLVPQSSE PQPKVHEPTD TDHTIESDKV DSYVRQLEAS SCDRWEVGVN CANDEAGSAS NQKQLFLWVD
601: DYKCSICGIE LPPSFIEERQ EHSDFHLAEK LQGEESGNHH RSFMPQQRAA QRGHTGSSSR QKKKQKPSPT ASKYVPIDAF FVKTNQNF
101: TRDLSRIWLH VDMDAFYAAV ETLCNPSLKG RPMAVGSMSM LSTANYEARK FGVRAAMPGF IARKLCPELL FVPVDFQKYN HYSNLTRKVF QKYDPNFLAA
201: SLDEAYLDIT SVCKESGITS GEVAKELRES VHLETGLTCS AGVAPNRLLA KVCSDINKPN GQFVLPNDRS AVVTFISSLP IRKIGGIGKV TERILKDVFG
301: IATCEEMLQK SSSLCGLFSR SSADFFLSVG LGLGGTDTPQ YRMRKSISNE RTFSATSDEA LLFQKLVDLS EMLSADMIKE GLFGRTLTLK LKTASFEIRS
401: RAVTLPSYIS SSEEILKHAS KLLKAEFPVS LRLMGLRMSH FSEDKNGIPP DPTQKTLSSF IFSGDASGGK TSDYRPLVSN VCDNTFSVDE NCCPTYCPET
501: SCDLRVSSME NQASDSTYSC HAIGNINEEL NETLVPQSSE PQPKVHEPTD TDHTIESDKV DSYVRQLEAS SCDRWEVGVN CANDEAGSAS NQKQLFLWVD
601: DYKCSICGIE LPPSFIEERQ EHSDFHLAEK LQGEESGNHH RSFMPQQRAA QRGHTGSSSR QKKKQKPSPT ASKYVPIDAF FVKTNQNF
001: MDNGESSSTN NSSRPWESYN TVFTNAKAGM EGVDKEKVQR VVYEMSKGSK YFQNEERKEA LMKQKIEHMR DRCAKLSSLD LSNYQKVVDK RILELEATRD
101: LSRIWLHVDM DAFYAAVETL SDPSIKGKPM AVGGLSMIST ANYEARKFGV RAAMPGFIAR KLCPDLIFVP VDFTKYTHYS DLTRKVFRNY DPHFIAGSLD
201: EAYLDITEVC RERGLSGGEI AEELRSSVYS ETGLTCSAGV AANRLLAKVC SDINKPNGQF VLQNDRSTVM TFVSFLPVRK IGGIGKVTEH ILKDALGIKT
301: CEEMVQKGSL LYALFSQSSA DFFLSVGLGL GGTNTPQVRS RKSISSERTF AATGDERLLY SKLDELAEML SHDMKKEGLT ARTLTLKLKT ASFEIRSRAV
401: SLQRYTCSSD DILKHATKLL KAELPVSVRL IGLRMSQFVE EIRNSDPSQG TITKFIVQKD SSRQAQDLDD NDSFDLDANK NCLSNDESGN VSFGSHETSS
501: AHLKDVVEYE ERSQIDSGKV IPNQECMKKE ERLQILEGDS LLKKYKECKP DTSHSMNDNS NATEAVSVFP QTEPLYWIDG YKCVLCGIEL PPSFVEERQE
601: HSDFHLAQRL QNEETGSSSS TTPSKRRILG KEKVNSKPKK QKPDQKDSSK HIPIHAFFTK SNQNSNETQR K
101: LSRIWLHVDM DAFYAAVETL SDPSIKGKPM AVGGLSMIST ANYEARKFGV RAAMPGFIAR KLCPDLIFVP VDFTKYTHYS DLTRKVFRNY DPHFIAGSLD
201: EAYLDITEVC RERGLSGGEI AEELRSSVYS ETGLTCSAGV AANRLLAKVC SDINKPNGQF VLQNDRSTVM TFVSFLPVRK IGGIGKVTEH ILKDALGIKT
301: CEEMVQKGSL LYALFSQSSA DFFLSVGLGL GGTNTPQVRS RKSISSERTF AATGDERLLY SKLDELAEML SHDMKKEGLT ARTLTLKLKT ASFEIRSRAV
401: SLQRYTCSSD DILKHATKLL KAELPVSVRL IGLRMSQFVE EIRNSDPSQG TITKFIVQKD SSRQAQDLDD NDSFDLDANK NCLSNDESGN VSFGSHETSS
501: AHLKDVVEYE ERSQIDSGKV IPNQECMKKE ERLQILEGDS LLKKYKECKP DTSHSMNDNS NATEAVSVFP QTEPLYWIDG YKCVLCGIEL PPSFVEERQE
601: HSDFHLAQRL QNEETGSSSS TTPSKRRILG KEKVNSKPKK QKPDQKDSSK HIPIHAFFTK SNQNSNETQR K
Arabidopsis Description
POLKDNA polymerase kappa [Source:UniProtKB/Swiss-Prot;Acc:Q6JDV7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.