Factsheet for Solyc01g107510.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0091g00200.t01	Wine grape	plastid	54.35	48.34
KRH77949	Soybean	plastid	50.53	47.35
CDY39397	Canola	plastid	47.85	47.3
CDY60654	Canola	plastid	47.27	46.74
AT5G44750.2	Thale cress	plastid	48.9	46.24
Bra025106.1-P	Field mustard	plastid	47.66	45.11
GSMUA_Achr10P...	Banana	nucleus, plastid	19.14	44.25
KXG20701	Sorghum	plastid	43.25	40.14
Zm00001d014568_P023	Maize	plastid	43.16	39.95
Os06t0691000-01	Rice	plastid	42.49	39.47
TraesCS7A01G436200.3	Wheat	plastid	42.49	37.88
TraesCS7B01G335900.1	Wheat	plastid	42.39	37.83
TraesCS7D01G426800.1	Wheat	plastid	42.3	37.62
HORVU7Hr1G099700.8	Barley	cytosol, mitochondrion, nucleus, plastid	42.2	37.6
GSMUA_Achr10P...	Banana	nucleus	24.78	36.63
Solyc01g107010.2.1	Tomato	nucleus	12.25	18.6
Solyc01g034150.2.1	Tomato	nucleus	11.0	16.13

Protein Annotations

KEGG:00230+2.7.7.7	KEGG:00240+2.7.7.7	Gene3D:1.10.150.20	MapMan:14.2.5	Gene3D:2.30.40.20	Gene3D:3.30.1490.100
Gene3D:3.30.70.270	Gene3D:3.40.50.10190	InterPro:BRCT_dom	InterPro:BRCT_dom_sf	InterPro:DNA_pol_Y-fam_lit_finger_sf	InterPro:DNA_pol_Y-fam_little_finger
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003684	GO:GO:0003824	GO:GO:0003887
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0006974	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009628	GO:GO:0009987	GO:GO:0010224	GO:GO:0016740	GO:GO:0016779
GO:GO:0042276	GO:GO:0071897	InterPro:IPR001126	InterPro:IPR001357	InterPro:IPR036420	InterPro:IPR036775
UniProt:K4B2W7	PFAM:PF00817	PFAM:PF11799	PFAM:PF16589	PIRSF:PIRSF036573	PFscan:PS50172
PFscan:PS50173	PANTHER:PTHR11076	PANTHER:PTHR11076:SF12	InterPro:REV1	SMART:SM00292	SUPFAM:SSF100879
SUPFAM:SSF52113	SUPFAM:SSF56672	EnsemblPlantsGene:Solyc01g107510.2	EnsemblPlants:Solyc01g107510.2.1	UniParc:UPI0002767E57	InterPro:UmuC

Description

DNA repair protein REV1 [Source:Projected from Arabidopsis thaliana (AT5G44750) UniProtKB/Swiss-Prot;Acc:A3EWL3]

Coordinates

chr1:+:95028456..95044153

Molecular Weight (calculated)

115601.0 Da

IEP (calculated)

5.725

GRAVY (calculated)

-0.327

Length

1045 amino acids

Sequence
(BLAST)

0001: MAVKNQKLHD QFEAEASSTS ISGPNSSKPI FQGVSIFVDG YTVPSSQELR GYMLKHGGHF ENYFSRRRVT HIICSNLPDS KVKNLRSFSR GLPVVKPTWV
0101: LDSVAANKLL NWVPYQLDQL ASEVNNQPKL SAFFTKNIAI YDDTTTCSTV QAISRVGSPL SYSGPFEDPM SIEEWQSAVD LEHCALQSKD LVQTDYNEDR
0201: VEESSCSIER PELSDAASGD GSQAPFSEPS GPHNNASVCS EWMSDPVNVG PSNLKIPRSP NQQHSTLNDA NFVENYFKHS RLHFIGTWRN RYRKRFPSSP
0301: GGFRCTSSGP SSSATANKTM IIHVDMDCFF VSVVIRNRPE LKDKPVAICH SDNPRGTAEI SSANYPARGY GVKAGMFVRD AKSCCPHLVI LSYDFEAYEE
0401: VADRFYNILH KYCNKVQAVS CDEAFLDATD SGVEDIQIFV SVIREEILDA TGCTASAGIA GNMLMARLAT RIAKPDGQCY IPAEKVEEHL RELPVKALPG
0501: IGHVLEEKLN GRQITTCGQL RMISKETLQK DFGSKTGSML WNYSRGIDDR LVGMIQESKS IGADVNWGVR FKDQKDVQCF LLNLCKEVSL RLQGCGVIGR
0601: KFTLKIKKRK GDAGEPVKYL GCGVCDNLSH SVTVPLATDS VDVLERIVSQ LFTTSHVDVE DIRGMGLQVS KLETADSSKQ GKERYSIRSW LTAPSAKTNN
0701: QNRRSSHEKA NSKDSVDERQ AQLQGDCSTP FIEMTAVSPS GTAGTLPPMN ELDIGVIESL PPEVYSEIND MYNGKLAHFI NEKRSKGKEN ISSVCPVAPD
0801: EAFAAHEHQY NEEEIQVVSH PNKLFADMKS ETLSDATVPN MDVVIDAPVS GGISLMPSSL SQVDTSVFQE LPEELRTDIL ELLPAHRNTE SSLDASLVCA
0901: NNQNCSPSIS SIDLWVGNPP EWIDIFKATN CQILCVLAEM YQKAGAKKQL SSVLQRTMSK IYILPDVGTD GWDEAVSCLC ELIKQYLRLK ISTDIEEVYI
1001: CSCLLRRLTA RSKVFIEVYN NLLPHFQASV SENYGGSFYI ASVTE

Best Arabidopsis Sequence Match ( AT5G44750.1 )
(BLAST)

0001: MKRSLGSNSS NNSGSGSNKK SKKNNNPSNQ KTLGAAWGAA SSRSSFRSSP FSDFGSYMEV KNRKLQNQFE TEASAASRGV SGSEKLIFQG VSIFVDGFTI
0101: PSHQELKGYM MKYGGRFENY FSRRSVTHII CSNLPDSKVK NLRTFSRGLP VVKPTWIVDS ISANRLLGWV PYQLDQLNDT QPKLSAFFAP RSHLTPQMAS
0201: PVTSFQPDTG YSEAEEGSSI RADDSEEARD HIDDEIDGVY IENTTPELTE QTGTGDLKSS EMNAEGLGNY DIEEKEVSSE LQSTTNLHST SDNKSVHANG
0301: KNGGKSIATA AGSSTRRHST LEDPNFVENY FKNSRLHFIG TWRNRYRKRF HGSSNGLKWA DSGQNTAEMA KKSTIIHIDL DCFFVSVVIK NRLELHDKPV
0401: AVCHSDNPKG TAEISSANYP ARAYGVKAGM FVRHAKDLCP QLVIVPYNFE AYEEVADQFY DILHRHCRKV QALSCDEAFL DVSDLSDVET EVLASTIRNE
0501: ILETTGCSAS AGIGGTMLMA RLATRVAKPA GQLYISAEKV EEFLDQLPVG TLPGVGSVLK EKLVKQNIQT CGQLRLISKD SLQKDFGVKT GEMLWSYSRG
0601: LDLRSVTAVQ ESKSIGAEVN WGVRFRDQQD VQHFLQCLCK EVSLRLQGCE MIGRTFTLKI KKRKKDAEEP TKYMGCGDCD NLSRSITVPA ATDDIEVLQR
0701: ISKKLFGSFC LDVKEVRGVG LQVSKLDSAD PSNKGSRTLK SWLSSAPAVV QIEQDDNVFA AKVRENSDCN RPVTGGVSRL RESNSEESSI QSGDTNSSLP
0801: PMCYLDMEVL ENLPPELLSE LDGTYGGKLF ELIEKKRGKR RINCNSPHVS LDGTAASIKE LKSLSVKIHG LSTSGEKEYK EPYVPHPSIA RTSNQHTIEM
0901: TDLLPSSLSQ VDVSVLQELP EELRADVLGA FPSHRRQQSS SDVPKETCKK QDEEPIDLKG TENEIGLSFS SLWFGNPPLW TEKFKVSGNC TMEKLSAIYF
1001: KVAQSRPMLS LVLQHAISEM SSFPDAASAS DLDKAIYDVC ELLKQYINLK VGGDIEEIYL CFRLLKRLAA RSQLFLQVYE ILSPFIQASI SEHYGGSLSI
1101: P

Arabidopsis Description

REV1DNA repair protein REV1 [Source:UniProtKB/Swiss-Prot;Acc:A3EWL3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.